Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010626A_C01 KMC010626A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680188.1| similar to replication factor C large subunit-l... 124 6e-28
ref|NP_500064.2| Putative transcription regulator with PHD zinc ... 46 3e-04
ref|NP_500767.1| Major sperm protein family member family member... 46 3e-04
pir||G88637 protein F53H1.4 [imported] - Caenorhabditis elegans 46 3e-04
ref|NP_492531.1| Putative nuclear protein, with a coiled coil do... 45 6e-04
>ref|NP_680188.1| similar to replication factor C large subunit-like; protein id:
At5g22010.1 [Arabidopsis thaliana]
gi|13374860|emb|CAC34494.1| replication factor C large
subunit-like protein [Arabidopsis thaliana]
Length = 956
Score = 124 bits (311), Expect = 6e-28
Identities = 67/147 (45%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Frame = +2
Query: 59 MSDIRKWFMKSHEKANNAAAPKPSN---PPKPSSAVKPDPDKTVPEGQGSSGRKITSKYF 229
MSDIRKWFMK+HEK N +A S+ P K ++ P + E ++ R+ TSKYF
Sbjct: 1 MSDIRKWFMKAHEKGNGSAPKSTSSKAGPVKNAAETAPIKSEQASEDLETADRRKTSKYF 60
Query: 230 NKDKQKPKDEKETQELPAKRKNGKDCEELPESRPLKKIHKADEDEGDDDCVLVAGKKKVA 409
KDK K KDEKE + +PAKRK + ++L + RP K D+D+ D D V +K
Sbjct: 61 GKDKTKVKDEKEVEAIPAKRKLKTESDDLVKPRPRKVTKVVDDDDDDFD---VPISRKTR 117
Query: 410 DSTPTKKLKSGSGRGVPKKSADLEEDD 490
D+TP+KKLKSGSGRG+ K+ D ++DD
Sbjct: 118 DTTPSKKLKSGSGRGIASKTVDNDDDD 144
>ref|NP_500064.2| Putative transcription regulator with PHD zinc finger
[Caenorhabditis elegans] gi|22532904|gb|AAC02578.2|
Hypothetical protein F53H1.4 [Caenorhabditis elegans]
Length = 1370
Score = 45.8 bits (107), Expect = 3e-04
Identities = 41/148 (27%), Positives = 64/148 (42%), Gaps = 5/148 (3%)
Frame = +2
Query: 20 PKQRFLFSRFSAQMSDIRKWFMKSH---EKANNAAAPKPSNPPKPSSAVKPDPDKTVPEG 190
PK L A SD+++ M + E AN +A P P+
Sbjct: 180 PKTAQLSVAAEADDSDVQEVSMDAESGAEAANKSAMKTPRGAPR---------------- 223
Query: 191 QGSSGRKITSKYFNKDKQKPKDEKETQELPAKRKNGKDCEELPESRPLKKIHKADE--DE 364
S G I S ++KQK KDEKE ++L K+K ++ ++ E KK+ + +E E
Sbjct: 224 -ASGGPVILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKE 282
Query: 365 GDDDCVLVAGKKKVADSTPTKKLKSGSG 448
++ A KK+ + T K LK +G
Sbjct: 283 KEEKAARKAEKKEKNNGTMDKFLKKDTG 310
>ref|NP_500767.1| Major sperm protein family member family member [Caenorhabditis
elegans] gi|7500669|pir||T33457 hypothetical protein
F36H12.3 - Caenorhabditis elegans
gi|3329623|gb|AAC26930.1| Hypothetical protein F36H12.3
[Caenorhabditis elegans]
Length = 335
Score = 45.8 bits (107), Expect = 3e-04
Identities = 39/131 (29%), Positives = 59/131 (44%)
Frame = +2
Query: 98 KANNAAAPKPSNPPKPSSAVKPDPDKTVPEGQGSSGRKITSKYFNKDKQKPKDEKETQEL 277
K A A K S P P A K D PE + S + ++ K++PK E+E +E
Sbjct: 24 KKKKAGAVKSSTAPAP--APKADSKMKAPEEKEKSKK-------SEKKEEPKKEEEKKE- 73
Query: 278 PAKRKNGKDCEELPESRPLKKIHKADEDEGDDDCVLVAGKKKVADSTPTKKLKSGSGRGV 457
+K+ GK ++ E + KK K D+ E + +KK D KK + +
Sbjct: 74 KSKKSEGKKSDKKEEKKEEKKEEKEDKKEEKKE------EKKEDDKKDEKKDEKKDEKEE 127
Query: 458 PKKSADLEEDD 490
KKS D +ED+
Sbjct: 128 DKKSEDKKEDE 138
Score = 36.2 bits (82), Expect = 0.20
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +2
Query: 83 MKSHEKANNAAAPKPSNPPKPSSAVKPDPDKTVPEGQGSSGRKITSKYFNKDKQKPKDEK 262
MK+ E+ + + PK K K+ EG+ S ++ + ++K+ K+EK
Sbjct: 47 MKAPEEKEKSKKSEKKEEPKKEEEKKEKSKKS--EGKKSDKKEEKKEEKKEEKEDKKEEK 104
Query: 263 ETQELPAKRKNGKDCEELPESRPLKKIH--KADEDEGDDD 376
+ ++ +K+ K E+ E KK K DE E DDD
Sbjct: 105 KEEKKEDDKKDEKKDEKKDEKEEDKKSEDKKEDEKEKDDD 144
>pir||G88637 protein F53H1.4 [imported] - Caenorhabditis elegans
Length = 1378
Score = 45.8 bits (107), Expect = 3e-04
Identities = 41/148 (27%), Positives = 64/148 (42%), Gaps = 5/148 (3%)
Frame = +2
Query: 20 PKQRFLFSRFSAQMSDIRKWFMKSH---EKANNAAAPKPSNPPKPSSAVKPDPDKTVPEG 190
PK L A SD+++ M + E AN +A P P+
Sbjct: 180 PKTAQLSVAAEADDSDVQEVSMDAESGAEAANKSAMKTPRGAPR---------------- 223
Query: 191 QGSSGRKITSKYFNKDKQKPKDEKETQELPAKRKNGKDCEELPESRPLKKIHKADE--DE 364
S G I S ++KQK KDEKE ++L K+K ++ ++ E KK+ + +E E
Sbjct: 224 -ASGGPVILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKE 282
Query: 365 GDDDCVLVAGKKKVADSTPTKKLKSGSG 448
++ A KK+ + T K LK +G
Sbjct: 283 KEEKAARKAEKKEKNNGTMDKFLKKDTG 310
>ref|NP_492531.1| Putative nuclear protein, with a coiled coil domain, nematode
specific (24.6 kD) [Caenorhabditis elegans]
gi|7497302|pir||T19897 hypothetical protein C41G7.6 -
Caenorhabditis elegans gi|3874911|emb|CAB02844.1|
Hypothetical protein C41G7.6 [Caenorhabditis elegans]
Length = 219
Score = 44.7 bits (104), Expect = 6e-04
Identities = 43/145 (29%), Positives = 61/145 (41%), Gaps = 10/145 (6%)
Frame = +2
Query: 86 KSHEKANNAAAPKPSNPPKPSSA-VKPDPDKTVPEGQGSSGRKITSKYFNKDKQKPK--- 253
KS K AP P+ P P + V PD +G+ G K + K +K++ K
Sbjct: 33 KSASKMTAPTAPAPAPPAAPDAPPVAPDAAAAPADGEKKDGDKKSEKKEGDEKKEEKKDE 92
Query: 254 ---DEKETQELPAKRKNGKDCEELPESRPLKKIHKAD---EDEGDDDCVLVAGKKKVADS 415
DEK+ +E K+ K E+ E + KK K D EDE DD +KK +
Sbjct: 93 DKKDEKKDEE---KKDGEKKSEKKDEKKDDKKDDKKDGKKEDEKKDD------EKKDEEK 143
Query: 416 TPTKKLKSGSGRGVPKKSADLEEDD 490
KK G +K D ++DD
Sbjct: 144 KDDKKEDDKKGDKKDEKKDDEKKDD 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,194,615
Number of Sequences: 1393205
Number of extensions: 11935126
Number of successful extensions: 75286
Number of sequences better than 10.0: 1068
Number of HSP's better than 10.0 without gapping: 56411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70319
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
