Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010610A_C01 KMC010610A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK09228.1|AC084320_15 putative GTP-binding protein [Oryza sa... 154 6e-37
pir||H96601 hypothetical protein T6H22.14 [imported] - Arabidops... 151 5e-36
ref|NP_176001.1| GTP-binding protein, putative; protein id: At1g... 151 5e-36
ref|NP_484766.1| probable GTP-binding protein [Nostoc sp. PCC 71... 142 4e-33
gb|ZP_00109941.1| hypothetical protein [Nostoc punctiforme] 136 2e-31
>gb|AAK09228.1|AC084320_15 putative GTP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 431
Score = 154 bits (390), Expect = 6e-37
Identities = 75/82 (91%), Positives = 79/82 (95%)
Frame = -2
Query: 581 YFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGV 402
YFT+G+KETKAWTILAGMTAPQAAGVIHSDF+KGFIRAETVSYDDFVAAGSL AREKG+
Sbjct: 350 YFTTGDKETKAWTILAGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVAAGSLGVAREKGL 409
Query: 401 LRSEGKDYIVQEGDVMLFRFNV 336
LR EGKDYIVQEGDVMLFRFNV
Sbjct: 410 LRLEGKDYIVQEGDVMLFRFNV 431
>pir||H96601 hypothetical protein T6H22.14 [imported] - Arabidopsis thaliana
gi|6056379|gb|AAF02843.1|AC009894_14 Similar to
GTP-binding protein [Arabidopsis thaliana]
Length = 419
Score = 151 bits (382), Expect = 5e-36
Identities = 73/82 (89%), Positives = 80/82 (97%)
Frame = -2
Query: 581 YFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGV 402
YFTSGEKET+AWTI AGMTAPQAAGVIHSDFEKGFIRAETV+Y+DFV AGS+AAAREKG+
Sbjct: 338 YFTSGEKETRAWTIHAGMTAPQAAGVIHSDFEKGFIRAETVAYEDFVTAGSIAAAREKGL 397
Query: 401 LRSEGKDYIVQEGDVMLFRFNV 336
LRSEGK+YIV+EGDVMLFRFNV
Sbjct: 398 LRSEGKEYIVKEGDVMLFRFNV 419
>ref|NP_176001.1| GTP-binding protein, putative; protein id: At1g56050.1 [Arabidopsis
thaliana]
Length = 418
Score = 151 bits (382), Expect = 5e-36
Identities = 73/82 (89%), Positives = 80/82 (97%)
Frame = -2
Query: 581 YFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGV 402
YFTSGEKET+AWTI AGMTAPQAAGVIHSDFEKGFIRAETV+Y+DFV AGS+AAAREKG+
Sbjct: 337 YFTSGEKETRAWTIHAGMTAPQAAGVIHSDFEKGFIRAETVAYEDFVTAGSIAAAREKGL 396
Query: 401 LRSEGKDYIVQEGDVMLFRFNV 336
LRSEGK+YIV+EGDVMLFRFNV
Sbjct: 397 LRSEGKEYIVKEGDVMLFRFNV 418
>ref|NP_484766.1| probable GTP-binding protein [Nostoc sp. PCC 7120]
gi|25330240|pir||AI1896 hypothetical protein all0723
[imported] - Nostoc sp. (strain PCC 7120)
gi|17130068|dbj|BAB72680.1| ORF_ID:all0723~probable
GTP-binding protein [Nostoc sp. PCC 7120]
Length = 363
Score = 142 bits (357), Expect = 4e-33
Identities = 68/82 (82%), Positives = 78/82 (94%)
Frame = -2
Query: 581 YFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGV 402
YFTSG KET+AWTI AGM+APQAAGVIHSDFE+GFIRAETV+Y+D VA GSL+AA+EKG+
Sbjct: 282 YFTSGPKETRAWTINAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVANGSLSAAKEKGL 341
Query: 401 LRSEGKDYIVQEGDVMLFRFNV 336
+RSEGK+YIVQEGDVMLFRFNV
Sbjct: 342 VRSEGKEYIVQEGDVMLFRFNV 363
>gb|ZP_00109941.1| hypothetical protein [Nostoc punctiforme]
Length = 363
Score = 136 bits (342), Expect = 2e-31
Identities = 64/82 (78%), Positives = 74/82 (90%)
Frame = -2
Query: 581 YFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGV 402
YFT G KET+AWTI AGM+APQAAGVIHSDFE+GFIRAETV+Y D V GS+ AA+EKG+
Sbjct: 282 YFTCGPKETRAWTINAGMSAPQAAGVIHSDFERGFIRAETVAYKDLVTTGSMNAAKEKGL 341
Query: 401 LRSEGKDYIVQEGDVMLFRFNV 336
+RSEGK+Y+VQEGDVMLFRFNV
Sbjct: 342 VRSEGKEYVVQEGDVMLFRFNV 363
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,946,025
Number of Sequences: 1393205
Number of extensions: 10167471
Number of successful extensions: 45086
Number of sequences better than 10.0: 181
Number of HSP's better than 10.0 without gapping: 30971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44092
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
