Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010604A_C01 KMC010604A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564142.1| expressed protein; protein id: At1g21500.1, sup... 100 1e-20
gb|AAH35076.1| Unknown (protein for IMAGE:5260356) [Homo sapiens] 42 0.007
dbj|BAB67828.1| KIAA1935 protein [Homo sapiens] 42 0.007
gb|AAK38270.1|AF327876_1 PF6 protein [Chlamydomonas reinhardtii] 41 0.012
gb|AAL99920.1|AF432213_1 CLL-associated antigen KW-13 [Homo sapi... 33 2.5
>ref|NP_564142.1| expressed protein; protein id: At1g21500.1, supported by cDNA:
100293., supported by cDNA: gi_13877530, supported by
cDNA: gi_20148726 [Arabidopsis thaliana]
gi|25373055|pir||H86347 hypothetical protein F24J8.11 -
Arabidopsis thaliana
gi|9454583|gb|AAF87906.1|AC015447_16 Unknown protein
[Arabidopsis thaliana]
gi|13877531|gb|AAK43843.1|AF370466_1 Unknown protein
[Arabidopsis thaliana] gi|20148727|gb|AAM10254.1|
unknown protein [Arabidopsis thaliana]
gi|21536493|gb|AAM60825.1| unknown [Arabidopsis
thaliana]
Length = 126
Score = 100 bits (249), Expect = 1e-20
Identities = 51/80 (63%), Positives = 60/80 (74%)
Frame = -2
Query: 479 RRRALVGLSGAVVLGLGWGDEQSAMGASKRPPPPPPKEKKDPNVSGVQAKVMASKKRKEA 300
RR LVGL GA+ ++ AM A++RPPPPPPKEKKDP V+GVQAKV+ASKKRKE
Sbjct: 41 RRTILVGLGGALWSWNALAAKEEAMAAARRPPPPPPKEKKDPTVTGVQAKVLASKKRKEE 100
Query: 299 MKESIAKLREKGKSINKELP 240
MK SIAKLREKGK + + P
Sbjct: 101 MKASIAKLREKGKPVVEAKP 120
>gb|AAH35076.1| Unknown (protein for IMAGE:5260356) [Homo sapiens]
Length = 573
Score = 41.6 bits (96), Expect = 0.007
Identities = 29/77 (37%), Positives = 39/77 (49%), Gaps = 4/77 (5%)
Frame = -2
Query: 419 EQSAMGASKRP--PPPPPKEKKDPNVSGVQAKVMASKKRKEAMKESIAKLREKGKSINKE 246
+QSA A + P PPPPP + + V ++ A +K + ES A + G E
Sbjct: 70 QQSAPQADEPPLPPPPPPPGELARSPEAVGPELEAEEKLSVRVAESAAAAPQGG----PE 125
Query: 245 LPPAPQEAP--PPAPEE 201
LPP+P P PPAPEE
Sbjct: 126 LPPSPASPPEQPPAPEE 142
>dbj|BAB67828.1| KIAA1935 protein [Homo sapiens]
Length = 441
Score = 41.6 bits (96), Expect = 0.007
Identities = 29/77 (37%), Positives = 39/77 (49%), Gaps = 4/77 (5%)
Frame = -2
Query: 419 EQSAMGASKRP--PPPPPKEKKDPNVSGVQAKVMASKKRKEAMKESIAKLREKGKSINKE 246
+QSA A + P PPPPP + + V ++ A +K + ES A + G E
Sbjct: 63 QQSAPQADEPPLPPPPPPPGELARSPEAVGPELEAEEKLSVRVAESAAAAPQGG----PE 118
Query: 245 LPPAPQEAP--PPAPEE 201
LPP+P P PPAPEE
Sbjct: 119 LPPSPASPPEQPPAPEE 135
>gb|AAK38270.1|AF327876_1 PF6 protein [Chlamydomonas reinhardtii]
Length = 2301
Score = 40.8 bits (94), Expect = 0.012
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -2
Query: 404 GASKRPPPPPPKE-----KKDPNVSGVQAKVMASKKRKEAMKESIAKLREKGKSINKELP 240
G+ +PPP PP E + +P V G AK A K A K+++ K + KGK + E
Sbjct: 1200 GSKPKPPPTPPPEPESVAEPEPEVKGKGAKAGA----KPASKDTLKKGKGKGKGGDDE-- 1253
Query: 239 PAPQEAPPP 213
P P PPP
Sbjct: 1254 PTPPPTPPP 1262
>gb|AAL99920.1|AF432213_1 CLL-associated antigen KW-13 [Homo sapiens]
Length = 991
Score = 33.1 bits (74), Expect = 2.5
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 419 EQSAMGASKRPPPPPPKEKKDPNVSGVQAKVMASKKRKEAMKESIAKLREKGKSINKELP 240
E +AMGAS+RPP P +K P + + + K + K I LR G +++ E+
Sbjct: 340 ESTAMGASRRPPEP----EKAPPAAPTRPSALELKVEELEEKGLIRILRGPGDAVSIEIL 395
Query: 239 PAPQEAP 219
P P
Sbjct: 396 PVAVATP 402
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,919,117
Number of Sequences: 1393205
Number of extensions: 13926618
Number of successful extensions: 114426
Number of sequences better than 10.0: 442
Number of HSP's better than 10.0 without gapping: 70609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103241
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
