Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010588A_C01 KMC010588A_c01
(361 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566076.1| expressed protein; protein id: At2g46500.1, sup... 33 0.70
ref|NP_657909.1| hypothetical protein predicted by GeneMark [Bac... 32 1.5
ref|NP_176627.1| unknown protein; protein id: At1g64460.1 [Arabi... 31 3.5
gb|AAF19692.1|AC009519_26 F1N19.4 [Arabidopsis thaliana] 31 3.5
ref|NP_769812.1| bll3172 [Bradyrhizobium japonicum] gi|27351430|... 31 4.5
>ref|NP_566076.1| expressed protein; protein id: At2g46500.1, supported by cDNA:
gi_16930424 [Arabidopsis thaliana]
gi|25409008|pir||F84903 probable ubiquitin [imported] -
Arabidopsis thaliana gi|4415931|gb|AAD20161.1| expressed
protein [Arabidopsis thaliana]
gi|16930425|gb|AAL31898.1|AF419566_1 At2g46500/F11C10.19
[Arabidopsis thaliana] gi|20197828|gb|AAM15268.1|
expressed protein [Arabidopsis thaliana]
gi|27363382|gb|AAO11610.1| At2g46500/F11C10.19
[Arabidopsis thaliana]
Length = 566
Score = 33.5 bits (75), Expect = 0.70
Identities = 14/22 (63%), Positives = 19/22 (85%)
Frame = -1
Query: 358 LPGTSEASFLDLVSVIMDSHLE 293
LPGTSEA+FL+ +S +MD HL+
Sbjct: 540 LPGTSEAAFLEALSDVMDYHLD 561
>ref|NP_657909.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 660
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -1
Query: 328 DLVSVIMDSHLEEPFP*VLNTHIAFVNKDGDKVMTLHSASKWIPY 194
DLV V H E + I FV +GDKV+T+ S +K +PY
Sbjct: 201 DLVGVKRIEHSRE----ICTALIGFVKGEGDKVITIESINKGLPY 241
>ref|NP_176627.1| unknown protein; protein id: At1g64460.1 [Arabidopsis thaliana]
Length = 301
Score = 31.2 bits (69), Expect = 3.5
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = -1
Query: 358 LPGTSEASFLDLVSVIMDSHLEE 290
LP +SEA+FL+ VSV MD L+E
Sbjct: 276 LPASSEATFLEAVSVAMDRRLDE 298
>gb|AAF19692.1|AC009519_26 F1N19.4 [Arabidopsis thaliana]
Length = 505
Score = 31.2 bits (69), Expect = 3.5
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = -1
Query: 358 LPGTSEASFLDLVSVIMDSHLEE 290
LP +SEA+FL+ VSV MD L+E
Sbjct: 480 LPASSEATFLEAVSVAMDRRLDE 502
>ref|NP_769812.1| bll3172 [Bradyrhizobium japonicum] gi|27351430|dbj|BAC48437.1|
bll3172 [Bradyrhizobium japonicum USDA 110]
Length = 243
Score = 30.8 bits (68), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = +3
Query: 273 STHGNGSSKWLSIITETRSRKEASLVP 353
ST G+G W I+ +T R E SL+P
Sbjct: 67 STQGSGDGSWHGIVLQTLKRNEISLIP 93
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 317,791,426
Number of Sequences: 1393205
Number of extensions: 6387907
Number of successful extensions: 14120
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14113
length of database: 448,689,247
effective HSP length: 95
effective length of database: 316,334,772
effective search space used: 7592034528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
