Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010576A_C01 KMC010576A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_139408.1| similar to ribosomal protein L35a [Rattus norve... 34 0.87
ref|NP_504064.1| Nuclear receptor family member family member [C... 33 2.5
ref|ZP_00067793.1| hypothetical protein [Microbulbifer degradans... 32 3.3
ref|XP_160596.1| hypothetical protein XP_160596 [Mus musculus] 32 3.3
sp|P14548|CYB_LEITA Cytochrome b gi|2144288|pir||H22848 ubiquino... 32 5.6
>ref|XP_139408.1| similar to ribosomal protein L35a [Rattus norvegicus] [Mus
musculus]
Length = 271
Score = 34.3 bits (77), Expect = 0.87
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = +3
Query: 357 VAQKTSMPSVTPCCLHHNPNSHSPPCVNNLLLISN 461
V K+ M V+ CL + NSH PPC+N LI N
Sbjct: 176 VPSKSQMSDVSLYCLLNESNSHRPPCMNFYELIKN 210
>ref|NP_504064.1| Nuclear receptor family member family member [Caenorhabditis
elegans] gi|7503662|pir||T25775 hypothetical protein
F47C10.7 - Caenorhabditis elegans
gi|1938436|gb|AAB52272.1| Hypothetical protein F47C10.7
[Caenorhabditis elegans]
Length = 353
Score = 32.7 bits (73), Expect = 2.5
Identities = 27/101 (26%), Positives = 43/101 (41%), Gaps = 23/101 (22%)
Frame = +2
Query: 260 QINQIAH*VLSVLLVPRPAAQP-----------------SLISPACITS---SSPE---N 370
++ ++ H +LSVLL PA P S + C+ S S P +
Sbjct: 252 KVTELEHAMLSVLLFCNPAIHPLSERTRRLLATRQKSYSSTLLQYCLLSYQQSGPSRFAD 311
Query: 371 LYAFCHSLLPSSQSEFSFTTMCQQPLTHFQLQHNLIHLCFH 493
L + H + +S+ S TT+CQ +L+H LI C +
Sbjct: 312 LLSISHVINKTSEDANSLTTLCQLYFPKSKLKHLLIDTCIN 352
>ref|ZP_00067793.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 445
Score = 32.3 bits (72), Expect = 3.3
Identities = 29/97 (29%), Positives = 44/97 (44%)
Frame = +2
Query: 200 ILTKQHQSNNHSSCNF*SLPQINQIAH*VLSVLLVPRPAAQPSLISPACITSSSPENLYA 379
I+ HQ + S F S Q N A +LL A+P+L I + PE LYA
Sbjct: 206 IIGMLHQRGDLLSHRFNSGTQDNNSAAIADFMLLQLINGAEPALRHLNNIKKTHPETLYA 265
Query: 380 FCHSLLPSSQSEFSFTTMCQQPLTHFQLQHNLIHLCF 490
L+ S +FTT ++P+ +HN ++ C+
Sbjct: 266 ---KLVSLSGELATFTTKSKRPVDFEPYKHNDLYKCY 299
>ref|XP_160596.1| hypothetical protein XP_160596 [Mus musculus]
Length = 106
Score = 32.3 bits (72), Expect = 3.3
Identities = 21/63 (33%), Positives = 31/63 (48%)
Frame = +1
Query: 280 LSVISPACTTSSSPAKSDQSCLYHVQ*PRKPLCLLSLLAAFITIRILIHHHVSTTSYSFP 459
+++ S C T + A S SC+ + P CL + L +IT HVSTT +S P
Sbjct: 1 MAIESVKCLTEDTGAISVGSCVLKLPHPPSLKCLTTALHGYITA------HVSTTVHSVP 54
Query: 460 TSA 468
+A
Sbjct: 55 LTA 57
>sp|P14548|CYB_LEITA Cytochrome b gi|2144288|pir||H22848 ubiquinol-cytochrome-c
reductase (EC 1.10.2.2) cytochrome b [validated] -
Leishmania tarentolae mitochondrion
Length = 371
Score = 31.6 bits (70), Expect = 5.6
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = -1
Query: 328 TWLGCWTW---YKQD**HSVCNLIDLRKALEVAAAMVVTLVLLC*D*FVHTHFVCTRFSF 158
TWL W W Y D ++ L L L +V+ + L C F+ + C RF+F
Sbjct: 159 TWLCYWIWGSEYIND--FTLLKLHVLHVLLPFVLILVIFMHLFCLHYFMSSDGFCDRFAF 216
Query: 157 NI*KKCWCTRF 125
+ C+C F
Sbjct: 217 YCERLCFCMWF 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,217,671
Number of Sequences: 1393205
Number of extensions: 8985508
Number of successful extensions: 24170
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24144
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
