Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010551A_C01 KMC010551A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222772.1| putative [Helicobacter pylori J99] gi|7464585|p... 35 0.53
ref|XP_208528.1| hypothetical protein XP_208528 [Homo sapiens] g... 35 0.69
ref|XP_146688.1| similar to nischarin; imidazoline receptor I-1-... 34 0.90
ref|NP_013299.1| Protein required for cell viability; Ylr198cp [... 33 2.6
gb|ZP_00005472.1| hypothetical protein [Rhodobacter sphaeroides] 32 3.4
>ref|NP_222772.1| putative [Helicobacter pylori J99] gi|7464585|pir||D71980
hypothetical protein jhp0050 - Helicobacter pylori
(strain J99) gi|4154557|gb|AAD05634.1| putative
[Helicobacter pylori J99]
Length = 220
Score = 35.0 bits (79), Expect = 0.53
Identities = 24/62 (38%), Positives = 28/62 (44%)
Frame = +1
Query: 91 TNENTLIFTIPTLLTN*NWPKQARLTNNKTNPNNKTIKLALQKATPAQPNSRPCRPGANR 270
TNENT + T T LT K RLT KT NNK LA +K A + R
Sbjct: 162 TNENTKLKTDKTDLTE----KNQRLTTEKTELNNKITGLATEKERLAADKENLTKESRQR 217
Query: 271 RP 276
+P
Sbjct: 218 KP 219
>ref|XP_208528.1| hypothetical protein XP_208528 [Homo sapiens]
gi|27734821|ref|NP_775849.1| hypothetical protein
FLJ90834 [Homo sapiens] gi|22761324|dbj|BAC11541.1|
unnamed protein product [Homo sapiens]
Length = 251
Score = 34.7 bits (78), Expect = 0.69
Identities = 27/101 (26%), Positives = 45/101 (43%), Gaps = 6/101 (5%)
Frame = +2
Query: 143 TGPNRPDSQITKQTQITKLLNLRSKKQHLLSQIAGPVAQALTEGPGLTCAAPRSPGSCAK 322
TGP+ + + + + + L S + LL I+GP + L+ P L + + P ++
Sbjct: 18 TGPHPLEHLLARLLKRRRRSTLMSSPRSLLCSISGPGSHLLSTHPILCHSVYQPPQPASR 77
Query: 323 P---RIFSLFSFPLSMHQTFLAGRLV---VSLTAAPGCTSV 427
P R L PL+ H L+G+L + T GC V
Sbjct: 78 PQAKRYQGLLPVPLAPHPLCLSGQLYLPNIPCTVIDGCGPV 118
>ref|XP_146688.1| similar to nischarin; imidazoline receptor I-1-like protein [Mus
musculus]
Length = 218
Score = 34.3 bits (77), Expect = 0.90
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 167 QITKQTQITKLLNLRSKKQHLLSQIAGPV-AQALTEGPGLTCAAP---RSPGSCAKPRIF 334
Q+ I +++ R KK +LS+ P+ + A ++ P + AP RSP S KPRI
Sbjct: 23 QLDSDGSICVVVSSRGKKPRILSEAPNPLRSPASSQKPRILSEAPHLLRSPASSQKPRIL 82
Query: 335 SLFSFPL 355
S PL
Sbjct: 83 SEAPHPL 89
>ref|NP_013299.1| Protein required for cell viability; Ylr198cp [Saccharomyces
cerevisiae] gi|2131795|pir||S69293 hypothetical protein
YLR198c - yeast (Saccharomyces cerevisiae)
gi|2340982|gb|AAB67449.1| Ylr198cp [Saccharomyces
cerevisiae]
Length = 119
Score = 32.7 bits (73), Expect = 2.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 318 PNQGYFPFLAFLYLCIRLSWLVAWLCRSLQL-LDAHQ*LLLRQLQ*LISN 464
P + P L +YLC ++ WL+ WL S +L + L+ QL L+ N
Sbjct: 67 PFPWFLPLLQLVYLCYKVPWLLEWLIHSSKLAYQCCRILIFAQLVSLVRN 116
>gb|ZP_00005472.1| hypothetical protein [Rhodobacter sphaeroides]
Length = 93
Score = 32.3 bits (72), Expect = 3.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 314 MSLVIWGLHRLSQGLRLAPGRQGLLFG*AGVAFWSASLIVLLFGFVLLFV 165
+SL IW G+ L P +G++ G A + FW A + VL+FV
Sbjct: 28 ISLAIWFACSFGLGIILRPALEGIMVGGADLGFWFAQQGSIYVFLVLIFV 77
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,334,885
Number of Sequences: 1393205
Number of extensions: 9795988
Number of successful extensions: 25364
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 24492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25324
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
