Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010547A_C01 KMC010547A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E96785 protein F10A5.28 [imported] - Arabidopsis thaliana g... 73 2e-12
ref|NP_565111.1| nodulin-like protein; protein id: At1g75500.1, ... 73 2e-12
dbj|BAB17350.1| putative nodulin [Oryza sativa (japonica cultiva... 58 7e-08
dbj|BAB02033.1| nodulin-like protein [Arabidopsis thaliana] 56 3e-07
ref|NP_188448.1| integral membrane protein, putative; protein id... 56 3e-07
>pir||E96785 protein F10A5.28 [imported] - Arabidopsis thaliana
gi|9369372|gb|AAF87121.1|AC006434_17 F10A5.28
[Arabidopsis thaliana]
Length = 355
Score = 73.2 bits (178), Expect = 2e-12
Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 4/71 (5%)
Frame = -2
Query: 543 LGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKIIK-EQLAITSTAEHSIIR---PGSQAR 376
LGEEFYLGGIIGAVLI+ GLY VL+GKSEE+K E+ AI S+AEH I R + +
Sbjct: 281 LGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQSSAEHGIERAPVSRNSIK 340
Query: 375 ASINQPLLSSS 343
+SI PLL S
Sbjct: 341 SSITTPLLHQS 351
>ref|NP_565111.1| nodulin-like protein; protein id: At1g75500.1, supported by cDNA:
gi_15028078, supported by cDNA: gi_20259306 [Arabidopsis
thaliana] gi|15028079|gb|AAK76570.1| putative nodulin
protein [Arabidopsis thaliana]
gi|20259307|gb|AAM14389.1| putative nodulin protein
[Arabidopsis thaliana] gi|23397059|gb|AAN31815.1|
putative nodulin [Arabidopsis thaliana]
Length = 389
Score = 73.2 bits (178), Expect = 2e-12
Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 4/71 (5%)
Frame = -2
Query: 543 LGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKIIK-EQLAITSTAEHSIIR---PGSQAR 376
LGEEFYLGGIIGAVLI+ GLY VL+GKSEE+K E+ AI S+AEH I R + +
Sbjct: 315 LGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQSSAEHGIERAPVSRNSIK 374
Query: 375 ASINQPLLSSS 343
+SI PLL S
Sbjct: 375 SSITTPLLHQS 385
>dbj|BAB17350.1| putative nodulin [Oryza sativa (japonica cultivar-group)]
gi|14090211|dbj|BAB55472.1| P0494A10.12 [Oryza sativa
(japonica cultivar-group)]
Length = 374
Score = 58.2 bits (139), Expect = 7e-08
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = -2
Query: 543 LGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKK 448
LG++ Y GGIIGAVLIV+GLY VLWGKSEEKK
Sbjct: 301 LGDQLYSGGIIGAVLIVIGLYFVLWGKSEEKK 332
>dbj|BAB02033.1| nodulin-like protein [Arabidopsis thaliana]
Length = 383
Score = 55.8 bits (133), Expect = 3e-07
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = -2
Query: 543 LGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKIIKEQ 433
LG++ Y GGI+GAV I++GLYLVLWGK+EE+K+ E+
Sbjct: 321 LGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLALEE 357
>ref|NP_188448.1| integral membrane protein, putative; protein id: At3g18200.1
[Arabidopsis thaliana]
Length = 360
Score = 55.8 bits (133), Expect = 3e-07
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = -2
Query: 543 LGEEFYLGGIIGAVLIVVGLYLVLWGKSEEKKIIKEQ 433
LG++ Y GGI+GAV I++GLYLVLWGK+EE+K+ E+
Sbjct: 298 LGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLALEE 334
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,442,787
Number of Sequences: 1393205
Number of extensions: 8887342
Number of successful extensions: 22081
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 21465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22068
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
