Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010532A_C01 KMC010532A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG43410.1| self-pruning interacting protein 1 [Lycopersicon ... 49 6e-05
dbj|BAB10495.1| gene_id:K21I16.3~unknown protein [Arabidopsis th... 44 0.001
gb|AAM63698.1| unknown [Arabidopsis thaliana] 44 0.001
ref|NP_198862.1| putative protein; protein id: At5g40460.1, supp... 44 0.001
gb|AAM63322.1| unknown [Arabidopsis thaliana] 42 0.006
>gb|AAG43410.1| self-pruning interacting protein 1 [Lycopersicon esculentum]
Length = 99
Score = 48.5 bits (114), Expect = 6e-05
Identities = 24/56 (42%), Positives = 37/56 (65%), Gaps = 2/56 (3%)
Frame = -1
Query: 520 RTPTSKESKIPAILNCPPAPKKPK--TFVSCKRKLNDAFQFFEVKNKEDMDAFFRS 359
+TP S +IP ++NCP APKKPK CKR+L F+ + ++E++D+FFR+
Sbjct: 28 KTPKSPSFRIPKVVNCPGAPKKPKRANRSLCKRRLR--FEVIVMVDEEEIDSFFRN 81
>dbj|BAB10495.1| gene_id:K21I16.3~unknown protein [Arabidopsis thaliana]
Length = 118
Score = 44.3 bits (103), Expect = 0.001
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -1
Query: 532 EQSYRTPTSKESKIPAILNCPPAPKKPKTFVSCK 431
E+ TPT+KE+KIP +L CPPAP+K + + C+
Sbjct: 57 EECSTTPTAKETKIPELLECPPAPRKRRPALKCR 90
>gb|AAM63698.1| unknown [Arabidopsis thaliana]
Length = 112
Score = 44.3 bits (103), Expect = 0.001
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -1
Query: 532 EQSYRTPTSKESKIPAILNCPPAPKKPKTFVSCK 431
E+ TPT+KE+KIP +L CPPAP+K + + C+
Sbjct: 57 EECSTTPTAKETKIPELLECPPAPRKRRPALKCR 90
>ref|NP_198862.1| putative protein; protein id: At5g40460.1, supported by cDNA:
26524. [Arabidopsis thaliana]
Length = 112
Score = 44.3 bits (103), Expect = 0.001
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -1
Query: 532 EQSYRTPTSKESKIPAILNCPPAPKKPKTFVSCK 431
E+ TPT+KE+KIP +L CPPAP+K + + C+
Sbjct: 57 EECSTTPTAKETKIPELLECPPAPRKRRPALKCR 90
>gb|AAM63322.1| unknown [Arabidopsis thaliana]
Length = 128
Score = 42.0 bits (97), Expect = 0.006
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Frame = -1
Query: 526 SYRTPTSKESKIPAILNC-PPAPKKPK------------TFVSCKRKLNDAFQFFEVKNK 386
S TPTS+E KIPA+++ PP P+KP+ SCKRKL + + N+
Sbjct: 40 SCSTPTSQEHKIPAVIDSPPPPPRKPRPPPSAPSATAALMIRSCKRKLLVSTCEI-IMNR 98
Query: 385 EDMDAFFRSTF 353
E++D FF S +
Sbjct: 99 EEIDRFFSSVY 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,229,688
Number of Sequences: 1393205
Number of extensions: 11991062
Number of successful extensions: 75766
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 55934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71104
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
