Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010518A_C01 KMC010518A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A71101 hypothetical protein PH1068 - Pyrococcus horikoshii ... 39 0.050
sp|Q03145|EPA2_MOUSE Ephrin type-A receptor 2 precursor (Tyrosin... 33 2.1
pir||F84832 glycerol-3-phosphate dehydrogenase [imported] - Arab... 32 4.7
>pir||A71101 hypothetical protein PH1068 - Pyrococcus horikoshii
gi|3257484|dbj|BAA30167.1| 158aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 158
Score = 38.5 bits (88), Expect = 0.050
Identities = 29/78 (37%), Positives = 43/78 (54%), Gaps = 1/78 (1%)
Frame = -2
Query: 306 LFSSFS*GLHSFMLSKSKSIKTAELYHPQDYIAVAS*KGIGLIKYMIGSFSSSIL-TDFF 130
LFSSF L+SF LSK S+ + L Y V++ +G L Y F + IL + F
Sbjct: 2 LFSSF---LNSFSLSKMSSLLSLGLRSKSTYATVSNLRGRKLYTYR---FRALILDSSLF 55
Query: 129 NFSLDDISWASPL*TLMF 76
NFSL+ + W+ + T++F
Sbjct: 56 NFSLNLLIWSFAISTILF 73
>sp|Q03145|EPA2_MOUSE Ephrin type-A receptor 2 precursor (Tyrosine-protein kinase
receptor ECK) (Epithelial cell kinase) (MPK-5) (SEK-2)
gi|1083301|pir||S49004 tyrosine kinase Mpk-5 - mouse
gi|505287|emb|CAA55135.1| ECK [Mus musculus]
Length = 977
Score = 33.1 bits (74), Expect = 2.1
Identities = 13/42 (30%), Positives = 25/42 (58%)
Frame = -2
Query: 495 QEITCLSNVVMSGNRNHLNVVPFDKVVSEILPQLVLPQTVEN 370
Q + LS + G +H N++P + VVS+ P +++ + +EN
Sbjct: 657 QRVDFLSEASIMGQFSHHNIIPLEGVVSKYKPMMIITEYMEN 698
>pir||F84832 glycerol-3-phosphate dehydrogenase [imported] - Arabidopsis
thaliana
Length = 433
Score = 32.0 bits (71), Expect = 4.7
Identities = 31/111 (27%), Positives = 47/111 (41%), Gaps = 6/111 (5%)
Frame = -2
Query: 516 LEKNVVAQEITCLSNVVMSGNRNHLNVVPFDKVVSEILPQLVLPQTVENATT*YFWAVDC 337
LE N++ ++ S V S N NH N D V S+ P+ LP+ V T +D
Sbjct: 113 LEVNMLVRD----SFVCQSINENHHNCDKVDSVASKYFPEHKLPENVIATTDAKAALLDA 168
Query: 336 SPCLYIHVS*LFSSFS*GLHSFM------LSKSKSIKTAELYHPQDYIAVA 202
CL+ SSF G+ ++ +S SK ++ L I +A
Sbjct: 169 DYCLHAVPVQFSSSFLEGIADYVDPGLPFISLSKGLELNTLRMMSQIIPIA 219
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,700,275
Number of Sequences: 1393205
Number of extensions: 7457259
Number of successful extensions: 17381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17370
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
