Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010516A_C01 KMC010516A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10077.1| contains similarity to RNA binding protein~gene_... 108 4e-23
ref|NP_568939.1| Peter Pan - like protein; protein id: At5g61770... 105 3e-22
gb|AAH45053.1| Similar to peter pan homolog (Drosophila) [Xenopu... 55 5e-07
gb|AAH44293.1| Similar to peter pan homolog (Drosophila) [Xenopu... 54 8e-07
dbj|BAC30210.1| unnamed protein product [Mus musculus] 51 9e-06
>dbj|BAB10077.1| contains similarity to RNA binding protein~gene_id:MAC9.8
[Arabidopsis thaliana]
Length = 346
Score = 108 bits (270), Expect = 4e-23
Identities = 54/90 (60%), Positives = 71/90 (78%), Gaps = 2/90 (2%)
Frame = -3
Query: 519 ATVTLSSDIGRVNRASTKSAVKLQEIGPRMTLQLVRIEKGLCSGEVLFSEYGNPSDKGKG 340
ATVTLSSD+GRVN+ +TKSAVKLQEIGPRMT+QLV++E+GLC+G ++FSEY + K +
Sbjct: 253 ATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIFSEYEDVDGKKEK 312
Query: 339 DDEMQDSEDGEDS--EGSEDEDQDGEDPEE 256
+ QD E+ EDS EG E ++DGED +E
Sbjct: 313 LKKKQDEEEEEDSEEEGEEGSEEDGEDMDE 342
>ref|NP_568939.1| Peter Pan - like protein; protein id: At5g61770.1, supported by
cDNA: gi_13605685, supported by cDNA: gi_15810076,
supported by cDNA: gi_17978999 [Arabidopsis thaliana]
gi|24212091|sp|Q9ASU7|PPAN_ARATH Peter Pan-like protein
gi|13605686|gb|AAK32836.1|AF361824_1 AT5g61770/mac9_70
[Arabidopsis thaliana] gi|15810077|gb|AAL06964.1|
At1g06730/F4H5_22 [Arabidopsis thaliana]
gi|17979000|gb|AAL47460.1| AT5g61770/mac9_70
[Arabidopsis thaliana]
Length = 345
Score = 105 bits (262), Expect = 3e-22
Identities = 55/90 (61%), Positives = 70/90 (77%), Gaps = 2/90 (2%)
Frame = -3
Query: 519 ATVTLSSDIGRVNRASTKSAVKLQEIGPRMTLQLVRIEKGLCSGEVLFSEYGNPSDKGKG 340
ATVTLSSD+GRVN+ +TKSAVKLQEIGPRMT+QLV++E+GLC+G ++FSEY K K
Sbjct: 253 ATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIFSEYDVDGKKEK- 311
Query: 339 DDEMQDSEDGEDS--EGSEDEDQDGEDPEE 256
+ QD E+ EDS EG E ++DGED +E
Sbjct: 312 LKKKQDEEEEEDSEEEGEEGSEEDGEDMDE 341
>gb|AAH45053.1| Similar to peter pan homolog (Drosophila) [Xenopus laevis]
Length = 655
Score = 55.1 bits (131), Expect = 5e-07
Identities = 42/126 (33%), Positives = 58/126 (45%), Gaps = 40/126 (31%)
Frame = -3
Query: 492 GRVNRASTKSAVKLQEIGPRMTLQLVRIEKGLCSGEVLFSEYGNPSD------------- 352
GR N + +SAV+L EIGPRMTLQLV+IE+GL G+VL+ + ++
Sbjct: 264 GRGNMKAQQSAVRLTEIGPRMTLQLVKIEEGLSDGKVLYHNFIQKTEEEIKALLESREKK 323
Query: 351 ---------KGKGDDEMQDSEDGE--------------DSEGSEDEDQD----GEDPEEA 253
K +GD E + ++ E D EGS+ E +D GE
Sbjct: 324 VRQKKERKKKQEGDVERKKNQKEENKKRSLAGMKRKHGDEEGSDSEVEDPGTLGEQNPAD 383
Query: 252 SLEDDD 235
EDDD
Sbjct: 384 QSEDDD 389
>gb|AAH44293.1| Similar to peter pan homolog (Drosophila) [Xenopus laevis]
Length = 567
Score = 54.3 bits (129), Expect = 8e-07
Identities = 32/85 (37%), Positives = 53/85 (61%), Gaps = 1/85 (1%)
Frame = -3
Query: 492 GRVNRASTKSAVKLQEIGPRMTLQLVRIEKGLCSGEVLFSEYGNPSDKG-KGDDEMQDSE 316
GR N + +SAV+L EIGPRMTLQLV+IE+GL G+VL+ + ++K K E ++ +
Sbjct: 261 GRGNMKAQQSAVRLTEIGPRMTLQLVKIEEGLSDGKVLYHNFIQRTEKEIKALLESREKK 320
Query: 315 DGEDSEGSEDEDQDGEDPEEASLED 241
+ E + ++ D E ++ + E+
Sbjct: 321 VRQKKERKKKQEGDVERKKKLNEEN 345
>dbj|BAC30210.1| unnamed protein product [Mus musculus]
Length = 470
Score = 50.8 bits (120), Expect = 9e-06
Identities = 23/48 (47%), Positives = 37/48 (76%)
Frame = -3
Query: 492 GRVNRASTKSAVKLQEIGPRMTLQLVRIEKGLCSGEVLFSEYGNPSDK 349
GR N + +SAV+L EIGPRMTLQL++I++G+ +G VLF + + +++
Sbjct: 259 GRGNMQAQQSAVRLTEIGPRMTLQLIKIQEGVGNGNVLFHSFVHKTEE 306
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,134,037
Number of Sequences: 1393205
Number of extensions: 9522883
Number of successful extensions: 139837
Number of sequences better than 10.0: 3127
Number of HSP's better than 10.0 without gapping: 56128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103575
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
