Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010488A_C01 KMC010488A_c01
(710 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T47952 hypothetical protein F2A19.200 - Arabidopsis thalian... 186 4e-46
ref|NP_567115.1| putative protein; protein id: At3g61600.1, supp... 186 4e-46
ref|NP_566069.1| expressed protein; protein id: At2g46260.1, sup... 181 1e-44
gb|AAM61110.1| unknown [Arabidopsis thaliana] 181 1e-44
pir||F84900 hypothetical protein At2g46260 [imported] - Arabidop... 181 1e-44
>pir||T47952 hypothetical protein F2A19.200 - Arabidopsis thaliana
gi|6850851|emb|CAB71090.1| putative protein [Arabidopsis
thaliana]
Length = 545
Score = 186 bits (471), Expect = 4e-46
Identities = 90/136 (66%), Positives = 103/136 (75%)
Frame = -2
Query: 709 ASLKCRFAERAYKYRPVKVVEFELPKQQCVVYLELKREECATLFPSGHVRSEAFHLFGPL 530
ASL R ERAYKYRPVKVVEFELP+ QCVVYL+LKREEC LFPSG V S+AFHL G
Sbjct: 382 ASLNRRLIERAYKYRPVKVVEFELPRPQCVVYLDLKREECGGLFPSGRVYSQAFHLGGQG 441
Query: 529 FFLSAECNMDQQGSFHCFDLFLRMQENSSACLAVDYEFAARSRPTNEFVSKYQGSYTFTG 350
FFLSA CNMDQQ SFHCF LFL MQE S VDYEF+ARS+P +F+SKY+G+YTFTG
Sbjct: 442 FFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFGVDYEFSARSKPAEDFISKYKGNYTFTG 501
Query: 349 GRLLAIKTCLRFHGIP 302
G+ + + G+P
Sbjct: 502 GKAVGYR---NLFGVP 514
Score = 62.0 bits (149), Expect = 8e-09
Identities = 27/39 (69%), Positives = 32/39 (81%)
Frame = -1
Query: 350 GKVVGHKNLFAIPWNSFIAEDSLLFIDDVLHLRAEFTIK 234
GK VG++NLF +PW SFIAEDS FI+ +LHLRAE TIK
Sbjct: 502 GKAVGYRNLFGVPWTSFIAEDSQYFINGILHLRAELTIK 540
>ref|NP_567115.1| putative protein; protein id: At3g61600.1, supported by cDNA:
gi_12006854 [Arabidopsis thaliana]
gi|12006855|gb|AAG44951.1|AF292397_1 POZ/BTB
containing-protein AtPOB1 [Arabidopsis thaliana]
Length = 561
Score = 186 bits (471), Expect = 4e-46
Identities = 90/136 (66%), Positives = 103/136 (75%)
Frame = -2
Query: 709 ASLKCRFAERAYKYRPVKVVEFELPKQQCVVYLELKREECATLFPSGHVRSEAFHLFGPL 530
ASL R ERAYKYRPVKVVEFELP+ QCVVYL+LKREEC LFPSG V S+AFHL G
Sbjct: 398 ASLNRRLIERAYKYRPVKVVEFELPRPQCVVYLDLKREECGGLFPSGRVYSQAFHLGGQG 457
Query: 529 FFLSAECNMDQQGSFHCFDLFLRMQENSSACLAVDYEFAARSRPTNEFVSKYQGSYTFTG 350
FFLSA CNMDQQ SFHCF LFL MQE S VDYEF+ARS+P +F+SKY+G+YTFTG
Sbjct: 458 FFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFGVDYEFSARSKPAEDFISKYKGNYTFTG 517
Query: 349 GRLLAIKTCLRFHGIP 302
G+ + + G+P
Sbjct: 518 GKAVGYR---NLFGVP 530
Score = 62.0 bits (149), Expect = 8e-09
Identities = 27/39 (69%), Positives = 32/39 (81%)
Frame = -1
Query: 350 GKVVGHKNLFAIPWNSFIAEDSLLFIDDVLHLRAEFTIK 234
GK VG++NLF +PW SFIAEDS FI+ +LHLRAE TIK
Sbjct: 518 GKAVGYRNLFGVPWTSFIAEDSQYFINGILHLRAELTIK 556
>ref|NP_566069.1| expressed protein; protein id: At2g46260.1, supported by cDNA:
111153., supported by cDNA: gi_15028122, supported by
cDNA: gi_19310796 [Arabidopsis thaliana]
gi|15028123|gb|AAK76685.1| unknown protein [Arabidopsis
thaliana] gi|19310797|gb|AAL85129.1| unknown protein
[Arabidopsis thaliana] gi|20197378|gb|AAC62880.2|
expressed protein [Arabidopsis thaliana]
Length = 561
Score = 181 bits (458), Expect = 1e-44
Identities = 91/136 (66%), Positives = 103/136 (74%), Gaps = 1/136 (0%)
Frame = -2
Query: 706 SLKCRFAERAYKYRPVKVVEFELPKQQCVVYLELKREECATLFPSGHVRSEAFHLFGPLF 527
S+ RF ERAYKYRPVKVVEFELP+ QCVVYL+LKREECA LFPSG V S+AFHL G F
Sbjct: 397 SMNRRFIERAYKYRPVKVVEFELPRPQCVVYLDLKREECAGLFPSGRVYSQAFHLGGQGF 456
Query: 526 FLSAECNMDQQGSFHCFDLFLRMQENSSACLAVDYEFAARSRPT-NEFVSKYQGSYTFTG 350
FLSA CNMDQQ SFHCF LFL MQE + VDYEFAAR + T E+VSKY+G+YTFTG
Sbjct: 457 FLSAHCNMDQQSSFHCFGLFLGMQEKGAVSFGVDYEFAARDKSTKEEYVSKYKGNYTFTG 516
Query: 349 GRLLAIKTCLRFHGIP 302
G+ + + GIP
Sbjct: 517 GKAVGYR---NLFGIP 529
Score = 62.0 bits (149), Expect = 8e-09
Identities = 29/44 (65%), Positives = 34/44 (76%)
Frame = -1
Query: 350 GKVVGHKNLFAIPWNSFIAEDSLLFIDDVLHLRAEFTIKH*SPI 219
GK VG++NLF IPW SFIAEDS FI+ +LHLRAE TIK S +
Sbjct: 517 GKAVGYRNLFGIPWTSFIAEDSQHFINGILHLRAELTIKRSSDL 560
>gb|AAM61110.1| unknown [Arabidopsis thaliana]
Length = 546
Score = 181 bits (458), Expect = 1e-44
Identities = 91/136 (66%), Positives = 103/136 (74%), Gaps = 1/136 (0%)
Frame = -2
Query: 706 SLKCRFAERAYKYRPVKVVEFELPKQQCVVYLELKREECATLFPSGHVRSEAFHLFGPLF 527
S+ RF ERAYKYRPVKVVEFELP+ QCVVYL+LKREECA LFPSG V S+AFHL G F
Sbjct: 382 SMNRRFIERAYKYRPVKVVEFELPRPQCVVYLDLKREECAGLFPSGRVYSQAFHLGGQGF 441
Query: 526 FLSAECNMDQQGSFHCFDLFLRMQENSSACLAVDYEFAARSRPT-NEFVSKYQGSYTFTG 350
FLSA CNMDQQ SFHCF LFL MQE + VDYEFAAR + T E+VSKY+G+YTFTG
Sbjct: 442 FLSAHCNMDQQSSFHCFGLFLGMQEKGAVSFGVDYEFAARDKSTKEEYVSKYKGNYTFTG 501
Query: 349 GRLLAIKTCLRFHGIP 302
G+ + + GIP
Sbjct: 502 GKAVGYR---NLFGIP 514
Score = 62.0 bits (149), Expect = 8e-09
Identities = 29/44 (65%), Positives = 34/44 (76%)
Frame = -1
Query: 350 GKVVGHKNLFAIPWNSFIAEDSLLFIDDVLHLRAEFTIKH*SPI 219
GK VG++NLF IPW SFIAEDS FI+ +LHLRAE TIK S +
Sbjct: 502 GKAVGYRNLFGIPWTSFIAEDSQHFINGILHLRAELTIKRSSDL 545
>pir||F84900 hypothetical protein At2g46260 [imported] - Arabidopsis thaliana
Length = 546
Score = 181 bits (458), Expect = 1e-44
Identities = 91/136 (66%), Positives = 103/136 (74%), Gaps = 1/136 (0%)
Frame = -2
Query: 706 SLKCRFAERAYKYRPVKVVEFELPKQQCVVYLELKREECATLFPSGHVRSEAFHLFGPLF 527
S+ RF ERAYKYRPVKVVEFELP+ QCVVYL+LKREECA LFPSG V S+AFHL G F
Sbjct: 382 SMNRRFIERAYKYRPVKVVEFELPRPQCVVYLDLKREECAGLFPSGRVYSQAFHLGGQGF 441
Query: 526 FLSAECNMDQQGSFHCFDLFLRMQENSSACLAVDYEFAARSRPT-NEFVSKYQGSYTFTG 350
FLSA CNMDQQ SFHCF LFL MQE + VDYEFAAR + T E+VSKY+G+YTFTG
Sbjct: 442 FLSAHCNMDQQSSFHCFGLFLGMQEKGAVSFGVDYEFAARDKSTKEEYVSKYKGNYTFTG 501
Query: 349 GRLLAIKTCLRFHGIP 302
G+ + + GIP
Sbjct: 502 GKAVGYR---NLFGIP 514
Score = 62.0 bits (149), Expect = 8e-09
Identities = 29/44 (65%), Positives = 34/44 (76%)
Frame = -1
Query: 350 GKVVGHKNLFAIPWNSFIAEDSLLFIDDVLHLRAEFTIKH*SPI 219
GK VG++NLF IPW SFIAEDS FI+ +LHLRAE TIK S +
Sbjct: 502 GKAVGYRNLFGIPWTSFIAEDSQHFINGILHLRAELTIKRSSDL 545
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,970,875
Number of Sequences: 1393205
Number of extensions: 12859963
Number of successful extensions: 31844
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 31083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31832
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
