Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010486A_C01 KMC010486A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567373.1| unknown protein; protein id: At4g10955.1 [Arabi... 54 1e-06
dbj|BAB84413.1| P0690B02.1 [Oryza sativa (japonica cultivar-group)] 49 5e-05
ref|NP_565323.1| expressed protein; protein id: At2g05260.1, sup... 44 0.001
dbj|BAC43675.1| unknown protein [Arabidopsis thaliana] gi|289509... 40 0.025
ref|NP_702323.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.81
>ref|NP_567373.1| unknown protein; protein id: At4g10955.1 [Arabidopsis thaliana]
Length = 360
Score = 53.9 bits (128), Expect = 1e-06
Identities = 20/35 (57%), Positives = 28/35 (79%)
Frame = -1
Query: 559 LTVNIAPAEDFKEAHGIHQWWQPDLRLEPKLFNYK 455
LTVN++ + DFK+AHGIHQWW+ D + E K++ YK
Sbjct: 326 LTVNLSSSRDFKQAHGIHQWWREDNKFETKVYQYK 360
>dbj|BAB84413.1| P0690B02.1 [Oryza sativa (japonica cultivar-group)]
Length = 318
Score = 48.5 bits (114), Expect = 5e-05
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1
Query: 559 LTVNIAPAEDFKEAHGIHQWWQPDLRLE 476
LTVN + DFK AHGIHQWW+PDL LE
Sbjct: 285 LTVNRGASPDFKAAHGIHQWWRPDLALE 312
>ref|NP_565323.1| expressed protein; protein id: At2g05260.1, supported by cDNA:
33377. [Arabidopsis thaliana] gi|25411153|pir||E84466
hypothetical protein At2g05260 [imported] - Arabidopsis
thaliana gi|4755196|gb|AAD29063.1| expressed protein
[Arabidopsis thaliana] gi|21592864|gb|AAM64814.1|
unknown [Arabidopsis thaliana]
gi|27765040|gb|AAO23641.1| At2g05260 [Arabidopsis
thaliana]
Length = 358
Score = 44.3 bits (103), Expect = 0.001
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -1
Query: 559 LTVNIAPAEDFKEAHGIHQWWQPDLRLEPKLFNYK 455
L VN +ED+K+AHGIHQWW+ D L ++ YK
Sbjct: 324 LIVNKTISEDYKDAHGIHQWWRDDQDLVSHIYMYK 358
>dbj|BAC43675.1| unknown protein [Arabidopsis thaliana] gi|28950935|gb|AAO63391.1|
At5g24230 [Arabidopsis thaliana]
Length = 369
Score = 39.7 bits (91), Expect = 0.025
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = -1
Query: 559 LTVNIAPAEDFKEAHGIHQWWQP 491
+T+N + + +FK AHGIHQWW P
Sbjct: 334 MTINASKSPNFKRAHGIHQWWDP 356
>ref|NP_702323.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497505|gb|AAN37047.1|AE014823_27 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 351
Score = 34.7 bits (78), Expect = 0.81
Identities = 35/153 (22%), Positives = 60/153 (38%), Gaps = 2/153 (1%)
Frame = +3
Query: 3 QTISTLND*NK*YKNFKGANTSFKYPSIKGIFSLRRQIHHLNLMIKLSAKNSTYKYNIIS 182
+TI N+ NK + + + P IK ++ R +H+ N YKY + S
Sbjct: 48 KTIDNSNEVNKIIE----VHDNIPSPIIKDYYNKRVNVHY----------NDRYKYPVTS 93
Query: 183 INEPRIS*FKHYYFSFYSNSSVSYFSGVNSFQQQGFFTHKLGQRFGSNSHLSTNFWSKMT 362
IN+ + ++ Y +++ + + FT K G G S+ STN
Sbjct: 94 INDVNENTYRSYRDNYH----------IRGNNLRNKFTRKRG---GGYSNASTNILGGSN 140
Query: 363 FQPFKIYLAQNEFD--QSSENQNQQPSINYRNY 455
F Y +D + + +N PS NY +
Sbjct: 141 F-----YRGSRNYDYKMNMDRRNYNPSYNYNKF 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,871,084
Number of Sequences: 1393205
Number of extensions: 7696015
Number of successful extensions: 17500
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 17016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17491
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
