Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010477A_C01 KMC010477A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180196.1| unknown protein; protein id: At2g26280.1 [Arabi... 57 7e-08
gb|AAN65434.1| Unknown protein [Oryza sativa (japonica cultivar-... 33 1.5
ref|NP_044570.1| ABC transporter [Toxoplasma gondii] gi|5231259|... 32 4.4
ref|NP_282806.1| hypothetical protein Cj1679 [Campylobacter jeju... 32 4.4
ref|NP_342341.1| Polysaccharide biosynthesis related protein [Su... 31 5.7
>ref|NP_180196.1| unknown protein; protein id: At2g26280.1 [Arabidopsis thaliana]
gi|25407833|pir||E84658 hypothetical protein At2g26280
[imported] - Arabidopsis thaliana
gi|3075391|gb|AAC14523.1| unknown protein [Arabidopsis
thaliana]
Length = 567
Score = 57.4 bits (137), Expect = 7e-08
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = -1
Query: 468 ARLPIAVQRYLLEEEXLDFTEPQPGLLRVVIY 373
ARLP+AVQRYLLEEE LD++EPQ GLLRV+IY
Sbjct: 536 ARLPVAVQRYLLEEEGLDYSEPQAGLLRVIIY 567
>gb|AAN65434.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
gi|27436759|gb|AAO13478.1| Unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 581
Score = 33.1 bits (74), Expect = 1.5
Identities = 16/31 (51%), Positives = 23/31 (73%)
Frame = -1
Query: 468 ARLPIAVQRYLLEEEXLDFTEPQPGLLRVVI 376
ARL AV++YLL E + +T+ QPGL RV++
Sbjct: 551 ARLTAAVEQYLL-EHGIQYTQAQPGLFRVLL 580
>ref|NP_044570.1| ABC transporter [Toxoplasma gondii]
gi|5231259|gb|AAD41153.1|U87145_22 ycf24 homolog
[Toxoplasma gondii]
Length = 465
Score = 31.6 bits (70), Expect = 4.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 51 ISYI*IEKGKIKNKNKRNLTKMKIRVQNEHKENADVESLLTNVILLQPS--LLLKFTMIF 224
ISY I NKNK K+ ++ + EN ++ + +V+LL + L+K + F
Sbjct: 77 ISYYSIPLNVYTNKNKYKSILSKLGLELKFSENLILDVIFDSVLLLNLTTFFLIKMGLFF 136
Query: 225 HDPFPEPFFYPF 260
F FYP+
Sbjct: 137 LSFFQSIIFYPY 148
>ref|NP_282806.1| hypothetical protein Cj1679 [Campylobacter jejuni]
gi|11346764|pir||D81265 hypothetical protein Cj1679
[imported] - Campylobacter jejuni (strain NCTC 11168)
gi|6969095|emb|CAB73666.1| hypothetical protein Cj1679
[Campylobacter jejuni subsp. jejuni NCTC 11168]
Length = 584
Score = 31.6 bits (70), Expect = 4.4
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 66 IEKGKIKNKNKRNLTKMKIRVQNEHKEN---ADVESLLTNVILLQPSLLL 206
++KG I + NL K++ R+ ++ KEN + +E LT+ IL Q + LL
Sbjct: 168 LQKGIIAEQTNLNLVKLEDRLHSKTKENLTISKIEDFLTHQILPQKAYLL 217
>ref|NP_342341.1| Polysaccharide biosynthesis related protein [Sulfolobus
solfataricus] gi|25395113|pir||D90234 polysaccharide
biosynthesis related protein [imported] - Sulfolobus
solfataricus gi|6015640|emb|CAB57467.1| hypothetical
protein [Sulfolobus solfataricus]
gi|13814019|gb|AAK41131.1| Polysaccharide biosynthesis
related protein [Sulfolobus solfataricus]
Length = 469
Score = 31.2 bits (69), Expect = 5.7
Identities = 12/38 (31%), Positives = 26/38 (67%)
Frame = -2
Query: 197 RGL*QNYISQQGLHVSIFLMFILYPNFHFC*IPFVFIF 84
+G+ ++S L + +FL+F+L+PN+ IP++F++
Sbjct: 77 KGVVGKFLSFPFLAIPVFLIFLLFPNYVKLAIPYLFLY 114
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,249,123
Number of Sequences: 1393205
Number of extensions: 7828258
Number of successful extensions: 21821
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21670
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
