Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010465A_C01 KMC010465A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179478.1| hypothetical protein; protein id: At2g18880.1 [... 33 2.6
ref|XP_145638.1| similar to GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALP... 32 5.7
ref|NP_472946.1| hypothetical protein [Plasmodium falciparum 3D7... 32 7.5
ref|NP_438417.1| Predicted serine protease [Haemophilus influenz... 31 9.8
sp|P45387|HAP_HAEIN Adhesion and penetration protein precursor g... 31 9.8
>ref|NP_179478.1| hypothetical protein; protein id: At2g18880.1 [Arabidopsis
thaliana] gi|7485790|pir||T01616 hypothetical protein
At2g18880 [imported] - Arabidopsis thaliana
gi|3004551|gb|AAC09024.1| hypothetical protein
[Arabidopsis thaliana]
Length = 417
Score = 33.1 bits (74), Expect = 2.6
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Frame = +3
Query: 201 VPSRGKNEKEVELIFSLTRGEKRDLI-----SKQMDTMSLLDTQIRNNHPHNHFFPSAVF 365
V + + EVE I + +KRDL+ +K +T SL+ I N
Sbjct: 63 VSKKNTRDHEVEEIIPSPKRQKRDLVTPLAKAKGNETCSLVKQLIIANEERRVGVFCYRI 122
Query: 366 LLLHTLVRGDRRVTMVVEQLSVSSVEMSYVHD*PANCI-*RISRKLV 503
LL H L++G ++ +V E++ + + + P +C+ ++SR LV
Sbjct: 123 LLAHKLLKGTKKYIIVSEEVEKAVMHLKNEFGVPISCLPSKMSRGLV 169
>ref|XP_145638.1| similar to GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALPHA-5 SUBUNIT
PRECURSOR (GABA(A) RECEPTOR) [Mus musculus]
Length = 242
Score = 32.0 bits (71), Expect = 5.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = +1
Query: 208 HEAKMKRKLNLFFP*RGERNEI*LVNKWTQCPC*THKLETIIRITTF------SPLQFSF 369
H+ + L+ P G++ + ++WT+CPC T E +++ F PL+F
Sbjct: 60 HKGSQDTLVLLYVPDLGQQQRRNIHHRWTECPCLTISAECPMQLEDFPMDAHACPLKFGS 119
Query: 370 CSTL 381
C ++
Sbjct: 120 CCSV 123
>ref|NP_472946.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494395|pir||E71623 protein with DnaJ domain
(RESA-like) PFB0085c - malaria parasite (Plasmodium
falciparum) gi|3845090|gb|AAC71807.1| hypothetical
protein [Plasmodium falciparum 3D7]
Length = 900
Score = 31.6 bits (70), Expect = 7.5
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -3
Query: 322 LICVSNKDIVSICLLIRSRFSPLVKEKISSTSFSFLP--RDGTF 197
+IC+ N D++S C + ++ P V E I+S+S ++ RDG +
Sbjct: 318 IICIKNNDLISGCENVDTQGCPSVNEIINSSSINYYEKMRDGLY 361
>ref|NP_438417.1| Predicted serine protease [Haemophilus influenzae Rd]
gi|1170166|sp|P44596|HAP1_HAEIN Adhesion and penetration
protein precursor
Length = 1409
Score = 31.2 bits (69), Expect = 9.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 92 HSHHKRQIECKANGHGVLSITISMFGYKLDKMK 190
H + + K +G G T S+FGYK DK+K
Sbjct: 891 HRFNTLTVNGKLSGQGTFQFTSSLFGYKSDKLK 923
>sp|P45387|HAP_HAEIN Adhesion and penetration protein precursor gi|2126295|pir||S60762
IgA-specific serine endopeptidase (EC 3.4.21.72)
precursor - Haemophilus influenzae (strain N187)
Length = 1394
Score = 31.2 bits (69), Expect = 9.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 92 HSHHKRQIECKANGHGVLSITISMFGYKLDKMK 190
H + + K +G G T S+FGYK DK+K
Sbjct: 873 HRFNTLTVNGKLSGQGTFQFTSSLFGYKSDKLK 905
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,608,889
Number of Sequences: 1393205
Number of extensions: 9418421
Number of successful extensions: 20279
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20189
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
