Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010461A_C01 KMC010461A_c01
(652 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563988.1| expressed protein; protein id: At1g16010.1, sup... 176 2e-43
gb|AAM62917.1| unknown [Arabidopsis thaliana] gi|25360983|gb|AAN... 167 1e-40
ref|NP_565247.1| expressed protein; protein id: At1g80900.1, sup... 166 3e-40
emb|CAD41494.1| OSJNBa0029H02.10 [Oryza sativa (japonica cultiva... 165 6e-40
gb|AAN73215.1| MRS2-5 [Arabidopsis thaliana] 117 1e-25
>ref|NP_563988.1| expressed protein; protein id: At1g16010.1, supported by cDNA:
gi_15451153, supported by cDNA: gi_20148402 [Arabidopsis
thaliana] gi|25352409|pir||G86294 T24D18.11 protein -
Arabidopsis thaliana
gi|6587806|gb|AAF18497.1|AC010924_10 Contains similarity
to gb|M82916 MRS2 protein from Saccharomyces cerivisae.
ESTs gb|N96043, gb|AI998651, gb|AA585850, gb|T42027 come
from this gene. [Arabidopsis thaliana]
gi|10880269|emb|CAC13981.1| putative magnesium
transporter [Arabidopsis thaliana]
gi|15451154|gb|AAK96848.1| Unknown protein [Arabidopsis
thaliana] gi|20148403|gb|AAM10092.1| unknown protein
[Arabidopsis thaliana] gi|25360797|gb|AAN73211.1| MRS2-1
[Arabidopsis thaliana]
Length = 442
Score = 176 bits (446), Expect = 2e-43
Identities = 87/95 (91%), Positives = 89/95 (93%)
Frame = -2
Query: 651 LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPLFD 472
LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEI F+
Sbjct: 348 LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIDFFN 407
Query: 471 VPSAFQWVLIITGVCGVFIFSAFVWFFKYRRLMPL 367
P AF+WVLIITGVCG IFSAFVWFFKYRRLMPL
Sbjct: 408 QPGAFRWVLIITGVCGFVIFSAFVWFFKYRRLMPL 442
>gb|AAM62917.1| unknown [Arabidopsis thaliana] gi|25360983|gb|AAN73219.1| MRS2-10
[Arabidopsis thaliana]
Length = 443
Score = 167 bits (422), Expect = 1e-40
Identities = 81/95 (85%), Positives = 87/95 (91%)
Frame = -2
Query: 651 LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPLFD 472
LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEI F+
Sbjct: 349 LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIDFFE 408
Query: 471 VPSAFQWVLIITGVCGVFIFSAFVWFFKYRRLMPL 367
P AF+WVL ITGVCG+ +F AF+WF+K RRLMPL
Sbjct: 409 KPGAFKWVLAITGVCGLVVFLAFLWFYKRRRLMPL 443
>ref|NP_565247.1| expressed protein; protein id: At1g80900.1, supported by cDNA:
17164. [Arabidopsis thaliana] gi|25352404|pir||H96841
hypothetical protein F23A5.26 [imported] - Arabidopsis
thaliana gi|6503302|gb|AAF14678.1|AC011713_26 Is a
member of PF|01544 CorA-like Mg2+ transporter protein
family. ESTs gb|Z48392 and gb|Z48391 come from this
gene. [Arabidopsis thaliana]
Length = 443
Score = 166 bits (419), Expect = 3e-40
Identities = 80/95 (84%), Positives = 87/95 (91%)
Frame = -2
Query: 651 LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPLFD 472
LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEI F+
Sbjct: 349 LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIDFFE 408
Query: 471 VPSAFQWVLIITGVCGVFIFSAFVWFFKYRRLMPL 367
P AF+WVL ITGVCG+ +F AF+W++K RRLMPL
Sbjct: 409 KPGAFKWVLAITGVCGLVVFLAFLWYYKRRRLMPL 443
>emb|CAD41494.1| OSJNBa0029H02.10 [Oryza sativa (japonica cultivar-group)]
Length = 428
Score = 165 bits (417), Expect = 6e-40
Identities = 77/95 (81%), Positives = 86/95 (90%)
Frame = -2
Query: 651 LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPLFD 472
LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVV+G+FGMNFE+ LF+
Sbjct: 334 LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVSGVFGMNFEVDLFN 393
Query: 471 VPSAFQWVLIITGVCGVFIFSAFVWFFKYRRLMPL 367
VP AF+W L+ITGVCG+ IF F+W+FK RR PL
Sbjct: 394 VPHAFEWTLVITGVCGLVIFCCFIWYFKKRRFFPL 428
>gb|AAN73215.1| MRS2-5 [Arabidopsis thaliana]
Length = 421
Score = 117 bits (294), Expect = 1e-25
Identities = 56/95 (58%), Positives = 74/95 (76%)
Frame = -2
Query: 651 LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPLFD 472
L+SLKEYIDDTED INI+L NV+NQLIQF+LLLT ATFV AIF V +FGMN + +F
Sbjct: 327 LSSLKEYIDDTEDLINIKLGNVQNQLIQFQLLLTAATFVAAIFAAVTAVFGMNLQDSVFQ 386
Query: 471 VPSAFQWVLIITGVCGVFIFSAFVWFFKYRRLMPL 367
P+ FQ+VL+ITG+ F++ FV +FK++++ PL
Sbjct: 387 NPTTFQYVLLITGIGCGFLYFGFVLYFKHKKVFPL 421
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,888,333
Number of Sequences: 1393205
Number of extensions: 11157042
Number of successful extensions: 28144
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 27282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28119
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
