Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010456A_C01 KMC010456A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189190.1| ABC transporter family protein; protein id: At3... 163 2e-39
dbj|BAB03081.1| ABC transporter-like protein [Arabidopsis thaliana] 163 2e-39
pir||C86441 probable ABC transporter [imported] - Arabidopsis th... 156 2e-37
ref|NP_564383.1| ABC transporter family protein; protein id: At1... 156 2e-37
ref|NP_194472.2| ABC transporter family protein; protein id: At4... 117 1e-25
>ref|NP_189190.1| ABC transporter family protein; protein id: At3g25620.1
[Arabidopsis thaliana]
Length = 646
Score = 163 bits (412), Expect = 2e-39
Identities = 79/113 (69%), Positives = 92/113 (80%)
Frame = -1
Query: 587 LALGXILMDVKQATTLASVTMLVFLLAGGYYIQPMPSFIAWLKYISFSHYCYNLLVGVQY 408
LALG ILMD K+A TL+SV MLVFLLAGGYYIQ +P FIAWLKY+SFSHYCY LLVGVQY
Sbjct: 532 LALGAILMDAKKAATLSSVLMLVFLLAGGYYIQHIPGFIAWLKYVSFSHYCYKLLVGVQY 591
Query: 407 SVNEVYECGKGLHCKVRDFPAIRCLELDDLWGDVAALAVMFVGYRVVAYLALR 249
+ +EVYECG GLHC V D+ I+ L + ++ DV ALAVM + YRV+AYLALR
Sbjct: 592 TWDEVYECGSGLHCSVMDYEGIKNLRIGNMMWDVLALAVMLLLYRVLAYLALR 644
>dbj|BAB03081.1| ABC transporter-like protein [Arabidopsis thaliana]
Length = 672
Score = 163 bits (412), Expect = 2e-39
Identities = 79/113 (69%), Positives = 92/113 (80%)
Frame = -1
Query: 587 LALGXILMDVKQATTLASVTMLVFLLAGGYYIQPMPSFIAWLKYISFSHYCYNLLVGVQY 408
LALG ILMD K+A TL+SV MLVFLLAGGYYIQ +P FIAWLKY+SFSHYCY LLVGVQY
Sbjct: 558 LALGAILMDAKKAATLSSVLMLVFLLAGGYYIQHIPGFIAWLKYVSFSHYCYKLLVGVQY 617
Query: 407 SVNEVYECGKGLHCKVRDFPAIRCLELDDLWGDVAALAVMFVGYRVVAYLALR 249
+ +EVYECG GLHC V D+ I+ L + ++ DV ALAVM + YRV+AYLALR
Sbjct: 618 TWDEVYECGSGLHCSVMDYEGIKNLRIGNMMWDVLALAVMLLLYRVLAYLALR 670
>pir||C86441 probable ABC transporter [imported] - Arabidopsis thaliana
gi|12321303|gb|AAG50724.1|AC079041_17 ABC transporter,
putative [Arabidopsis thaliana]
Length = 646
Score = 156 bits (395), Expect = 2e-37
Identities = 69/112 (61%), Positives = 93/112 (82%)
Frame = -1
Query: 587 LALGXILMDVKQATTLASVTMLVFLLAGGYYIQPMPSFIAWLKYISFSHYCYNLLVGVQY 408
LA G +LM++KQATTLASVT LVFL+AGGYY+Q +P FI WLKY+S+S+YCY LL+G+QY
Sbjct: 529 LAFGALLMNIKQATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQY 588
Query: 407 SVNEVYECGKGLHCKVRDFPAIRCLELDDLWGDVAALAVMFVGYRVVAYLAL 252
+ ++ YEC KG+ C+V DFPAI+ + L++LW DV + VM VGYR++AY+AL
Sbjct: 589 TDDDYYECSKGVWCRVGDFPAIKSMGLNNLWIDVFVMGVMLVGYRLMAYMAL 640
>ref|NP_564383.1| ABC transporter family protein; protein id: At1g31770.1, supported
by cDNA: 95290. [Arabidopsis thaliana]
gi|12597842|gb|AAG60152.1|AC074360_17 hypothetical
protein [Arabidopsis thaliana]
gi|21618054|gb|AAM67104.1| ABC transporter, putative
[Arabidopsis thaliana] gi|26450146|dbj|BAC42192.1|
unknown protein [Arabidopsis thaliana]
Length = 648
Score = 156 bits (395), Expect = 2e-37
Identities = 69/112 (61%), Positives = 93/112 (82%)
Frame = -1
Query: 587 LALGXILMDVKQATTLASVTMLVFLLAGGYYIQPMPSFIAWLKYISFSHYCYNLLVGVQY 408
LA G +LM++KQATTLASVT LVFL+AGGYY+Q +P FI WLKY+S+S+YCY LL+G+QY
Sbjct: 531 LAFGALLMNIKQATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQY 590
Query: 407 SVNEVYECGKGLHCKVRDFPAIRCLELDDLWGDVAALAVMFVGYRVVAYLAL 252
+ ++ YEC KG+ C+V DFPAI+ + L++LW DV + VM VGYR++AY+AL
Sbjct: 591 TDDDYYECSKGVWCRVGDFPAIKSMGLNNLWIDVFVMGVMLVGYRLMAYMAL 642
>ref|NP_194472.2| ABC transporter family protein; protein id: At4g27420.1
[Arabidopsis thaliana]
Length = 639
Score = 117 bits (293), Expect = 1e-25
Identities = 61/119 (51%), Positives = 79/119 (66%), Gaps = 3/119 (2%)
Frame = -1
Query: 587 LALGXILMDVKQATTLASVTMLVFLLAGGYYIQPMPSFIAWLKYISFSHYCYNLLVGVQY 408
LALG ++MD K ATTL SV ML FLLAGGYY+Q +P FI+W+KY+S +Y Y LL+ QY
Sbjct: 517 LALGALVMDQKSATTLGSVIMLTFLLAGGYYVQHVPVFISWIKYVSIGYYTYKLLILGQY 576
Query: 407 SVNEVYECGKG--LHCKVRDFPAIRCLELDDLWGDVAALAVMFVGYRVVAYLAL-RMGQ 240
+ NE+Y CG L C V DF I+ + + AL M V YRV+AY+AL R+G+
Sbjct: 577 TANELYPCGDNGKLRCHVGDFEGIKHIGFNSGLVSALALTAMLVVYRVIAYIALTRIGK 635
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,275,623
Number of Sequences: 1393205
Number of extensions: 9986799
Number of successful extensions: 25213
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 24106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25142
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
