Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010451A_C01 KMC010451A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194258.1| UMP/CMP kinase like protein; protein id: At4g25... 38 0.084
ref|NP_646575.1| ORFID:MW1758~hypothetical protein, similar to E... 32 3.5
sp|O24464|KAD_PRUAR ADENYLATE KINASE (ATP-AMP TRANSPHOSPHORYLASE... 32 6.0
>ref|NP_194258.1| UMP/CMP kinase like protein; protein id: At4g25280.1 [Arabidopsis
thaliana] gi|7484791|pir||T05549 adenylate kinase
homolog F24A6.120 - Arabidopsis thaliana
gi|4454016|emb|CAA23069.1| UMP/CMP kinase like protein
[Arabidopsis thaliana] gi|7269379|emb|CAB81339.1|
UMP/CMP kinase like protein [Arabidopsis thaliana]
Length = 227
Score = 37.7 bits (86), Expect = 0.084
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -1
Query: 467 GSIDNNIVTMKKRIKIFETLNLHVLD 390
G ID+NI TMKKR+KIF LN V+D
Sbjct: 169 GRIDDNITTMKKRLKIFNALNRPVID 194
>ref|NP_646575.1| ORFID:MW1758~hypothetical protein, similar to EpiG [Genomic island
nu Sa beta2] [Staphylococcus aureus subsp. aureus MW2]
gi|21204928|dbj|BAB95623.1| bsaG [Staphylococcus aureus
subsp. aureus MW2]
Length = 232
Score = 32.3 bits (72), Expect = 3.5
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Frame = -2
Query: 301 SLMLQ*LLLQLVLVVYNFGGWNKYIHFLP----CSWLHAHLLVC*HVKS*CILSKDVSYL 134
SL++ + Q++ N G +N H L +WL+A ++ + + CIL ++ L
Sbjct: 59 SLLISINVYQVINFEENIGHFN---HILGKANRLNWLNASMIFTYTITAICILLASINLL 115
Query: 133 KHGKSVNCNFFFL*VTEPPLKSGLAIMYNIILLMLINI 20
H + F+ G+++ +N+I+L+L+ I
Sbjct: 116 WHSHDMKITLMFI---------GVSLFFNVIILLLLFI 144
>sp|O24464|KAD_PRUAR ADENYLATE KINASE (ATP-AMP TRANSPHOSPHORYLASE)
gi|2351578|gb|AAB68604.1| adenylate kinase homolog
[Prunus armeniaca]
Length = 231
Score = 31.6 bits (70), Expect = 6.0
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = -1
Query: 467 GSIDNNIVTMKKRIKIFETLNLHVLD 390
G +D+NI T+KKR++IF+ LN V++
Sbjct: 173 GRVDDNIDTIKKRLEIFDELNWPVIN 198
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,254,493
Number of Sequences: 1393205
Number of extensions: 8023670
Number of successful extensions: 14546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14538
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
