Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010446A_C01 KMC010446A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB85255.1| putative ADP-ribosylation factor [Oryza sativa (... 332 2e-90
sp|P51823|ARF_ORYSA ADP-RIBOSYLATION FACTOR gi|25294170|pir||T52... 327 5e-89
sp|O48920|ARF_VIGUN ADP-ribosylation factor gi|2689631|gb|AAB913... 327 5e-89
ref|NP_196971.1| ADP-ribosylation factor - like protein; protein... 327 6e-89
dbj|BAA90347.1| unnamed protein product [Oryza sativa (japonica ... 327 8e-89
>dbj|BAB85255.1| putative ADP-ribosylation factor [Oryza sativa (japonica
cultivar-group)] gi|20161472|dbj|BAB90396.1|
ADP-ribosylation factor [Oryza sativa (japonica
cultivar-group)]
Length = 376
Score = 332 bits (851), Expect = 2e-90
Identities = 169/185 (91%), Positives = 173/185 (93%), Gaps = 1/185 (0%)
Frame = +1
Query: 10 IRDSLFSPKPLKSRRAMVGV-KMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLK 186
IR F+P+ R A G +MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLK
Sbjct: 157 IRFRGFAPRRFMDRTARYGDGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLK 216
Query: 187 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 366
LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+
Sbjct: 217 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 276
Query: 367 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 546
RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST
Sbjct: 277 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 336
Query: 547 CATSG 561
CATSG
Sbjct: 337 CATSG 341
>sp|P51823|ARF_ORYSA ADP-RIBOSYLATION FACTOR gi|25294170|pir||T52341 ADP-ribosylation
factor [imported] - rice gi|1132483|dbj|BAA04607.1|
ADP-ribosylation factor [Oryza sativa (japonica
cultivar-group)] gi|13646976|dbj|BAB41081.1|
ADP-ribosylation factor [Triticum aestivum]
gi|23304413|emb|CAD48129.2| ADP-ribosylation factor
1-like protein [Hordeum vulgare subsp. spontaneum]
Length = 181
Score = 327 bits (839), Expect = 5e-89
Identities = 162/163 (99%), Positives = 163/163 (99%)
Frame = +1
Query: 73 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 252
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 253 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 432
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 433 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 561
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
>sp|O48920|ARF_VIGUN ADP-ribosylation factor gi|2689631|gb|AAB91395.1| ADP-ribosylation
factor [Vigna unguiculata]
Length = 181
Score = 327 bits (839), Expect = 5e-89
Identities = 162/163 (99%), Positives = 163/163 (99%)
Frame = +1
Query: 73 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 252
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 253 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 432
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 433 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 561
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
>ref|NP_196971.1| ADP-ribosylation factor - like protein; protein id: At5g14670.1
[Arabidopsis thaliana] gi|11274627|pir||T48640
ADP-ribosylation factor-like protein - Arabidopsis
thaliana gi|7573316|emb|CAB87634.1| ADP-ribosylation
factor-like protein [Arabidopsis thaliana]
Length = 188
Score = 327 bits (838), Expect = 6e-89
Identities = 162/163 (99%), Positives = 162/163 (99%)
Frame = +1
Query: 73 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 252
MGL FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 253 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 432
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 433 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 561
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
>dbj|BAA90347.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|7242921|dbj|BAA92519.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 181
Score = 327 bits (837), Expect = 8e-89
Identities = 161/163 (98%), Positives = 163/163 (99%)
Frame = +1
Query: 73 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 252
MGLTFTKLFSRLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 253 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 432
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 433 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 561
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT+G
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTG 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,896,705
Number of Sequences: 1393205
Number of extensions: 12139469
Number of successful extensions: 54490
Number of sequences better than 10.0: 1962
Number of HSP's better than 10.0 without gapping: 51246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54146
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
