Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010436A_C01 KMC010436A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00022235.1| hypothetical protein [Ralstonia metallidurans] 33 3.1
ref|NP_744967.1| methyl-accepting chemotaxis transducer [Pseudom... 32 4.1
gb|AAF79424.1|AC025808_6 F18O14.14 [Arabidopsis thaliana] 31 9.1
>gb|ZP_00022235.1| hypothetical protein [Ralstonia metallidurans]
Length = 311
Score = 32.7 bits (73), Expect = 3.1
Identities = 10/21 (47%), Positives = 16/21 (75%)
Frame = +3
Query: 399 RSWPSEHLPRFFDPWFVDREK 461
R WP +LP+ +DP F+DR++
Sbjct: 227 RKWPEAYLPKIYDPKFIDRQE 247
>ref|NP_744967.1| methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
gi|24984417|gb|AAN68431.1|AE016475_10 methyl-accepting
chemotaxis transducer [Pseudomonas putida KT2440]
Length = 550
Score = 32.3 bits (72), Expect = 4.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 363 YKIALILIFVQGATCEWETVRDTRSFLREIKGSIKRIIGGRGDL*RTLLV 214
Y ++ L+ V A+ W +R S +R + GS+K I G GDL R + V
Sbjct: 200 YLLSFCLLLVVSASAAW-VIRQVMSNVRGVIGSLKTIASGDGDLTRRVQV 248
>gb|AAF79424.1|AC025808_6 F18O14.14 [Arabidopsis thaliana]
Length = 183
Score = 31.2 bits (69), Expect = 9.1
Identities = 14/42 (33%), Positives = 21/42 (49%)
Frame = +3
Query: 30 KRLTMLYGNNILCIRSLVSTHITDQNPKHSAKVFIITYHIKK 155
K LT++Y +N CI L +I KH F T+ ++K
Sbjct: 98 KTLTIMYEDNAACIAQLKDEYIKGDRTKHILPKFFFTHDLQK 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,148,140
Number of Sequences: 1393205
Number of extensions: 9428936
Number of successful extensions: 25166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25158
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
