Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010434A_C01 KMC010434A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JC7234 27k vesicle-associated membrane protein-associated p... 91 1e-17
ref|NP_182039.1| putative VAMP-associated protein; protein id: A... 90 3e-17
gb|AAM63134.1| putative VAMP-associated protein [Arabidopsis tha... 83 3e-15
pir||T47871 hypothetical protein T4C21.10 - Arabidopsis thaliana... 83 3e-15
ref|NP_567101.1| putative protein; protein id: At3g60600.1, supp... 83 3e-15
>pir||JC7234 27k vesicle-associated membrane protein-associated protein -
curled-leaved tobacco gi|6688926|emb|CAB65313.1| VAP27
[Nicotiana plumbaginifolia]
Length = 240
Score = 90.9 bits (224), Expect = 1e-17
Identities = 44/66 (66%), Positives = 55/66 (82%)
Frame = -1
Query: 676 DKSAEAKALIARLTEEKNNAIQQNNKLSQELDMLRRESNKSRGGISMLIVILIGLLGIIM 497
D S+E KALI++LTEEK + IQQNNKL QEL +LRRE N SRGGI + V++IGLLGII+
Sbjct: 174 DSSSETKALISKLTEEKISVIQQNNKLQQELALLRRERNSSRGGIPTIYVLIIGLLGIIL 233
Query: 496 GYIMKK 479
GY++KK
Sbjct: 234 GYLLKK 239
>ref|NP_182039.1| putative VAMP-associated protein; protein id: At2g45140.1,
supported by cDNA: 6457., supported by cDNA: gi_20260229
[Arabidopsis thaliana] gi|25363150|pir||H84886 probable
VAMP-associated protein [imported] - Arabidopsis
thaliana gi|20260230|gb|AAM13013.1| putative
VAMP-associated protein [Arabidopsis thaliana]
gi|21594019|gb|AAM65937.1| putative VAMP-associated
protein [Arabidopsis thaliana]
Length = 239
Score = 89.7 bits (221), Expect = 3e-17
Identities = 42/69 (60%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Frame = -1
Query: 682 ASDKSAEAKALIARLTEEKNNAIQQNNKLSQELDMLRRESNKSR-GGISMLIVILIGLLG 506
A D S+EA+AL+ +LTEEKN+A+Q NN+L QELD LRRES +S+ GGI + V+L+GL+G
Sbjct: 170 AQDNSSEARALVTKLTEEKNSAVQLNNRLQQELDQLRRESKRSKSGGIPFMYVLLVGLIG 229
Query: 505 IIMGYIMKK 479
+I+GYIMK+
Sbjct: 230 LILGYIMKR 238
>gb|AAM63134.1| putative VAMP-associated protein [Arabidopsis thaliana]
Length = 240
Score = 83.2 bits (204), Expect = 3e-15
Identities = 40/67 (59%), Positives = 56/67 (82%), Gaps = 1/67 (1%)
Frame = -1
Query: 676 DKSAEAKALIARLTEEKNNAIQQNNKLSQELDMLRRESNKSR-GGISMLIVILIGLLGII 500
+ ++EA+ALI +LTEEK +AIQ NN+L +ELD LRRES KS+ GGI + V+L+GL+G+I
Sbjct: 173 ENTSEARALITKLTEEKQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLI 232
Query: 499 MGYIMKK 479
+GYIMK+
Sbjct: 233 LGYIMKR 239
>pir||T47871 hypothetical protein T4C21.10 - Arabidopsis thaliana
gi|7329670|emb|CAB82664.1| putative protein [Arabidopsis
thaliana]
Length = 250
Score = 83.2 bits (204), Expect = 3e-15
Identities = 40/67 (59%), Positives = 56/67 (82%), Gaps = 1/67 (1%)
Frame = -1
Query: 676 DKSAEAKALIARLTEEKNNAIQQNNKLSQELDMLRRESNKSR-GGISMLIVILIGLLGII 500
+ ++EA+ALI +LTEEK +AIQ NN+L +ELD LRRES KS+ GGI + V+L+GL+G+I
Sbjct: 183 ENTSEARALITKLTEEKQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLI 242
Query: 499 MGYIMKK 479
+GYIMK+
Sbjct: 243 LGYIMKR 249
>ref|NP_567101.1| putative protein; protein id: At3g60600.1, supported by cDNA:
19714., supported by cDNA: gi_17473762 [Arabidopsis
thaliana] gi|17473763|gb|AAL38320.1| putative protein
[Arabidopsis thaliana]
Length = 256
Score = 83.2 bits (204), Expect = 3e-15
Identities = 40/67 (59%), Positives = 56/67 (82%), Gaps = 1/67 (1%)
Frame = -1
Query: 676 DKSAEAKALIARLTEEKNNAIQQNNKLSQELDMLRRESNKSR-GGISMLIVILIGLLGII 500
+ ++EA+ALI +LTEEK +AIQ NN+L +ELD LRRES KS+ GGI + V+L+GL+G+I
Sbjct: 189 ENTSEARALITKLTEEKQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLI 248
Query: 499 MGYIMKK 479
+GYIMK+
Sbjct: 249 LGYIMKR 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,432,842
Number of Sequences: 1393205
Number of extensions: 10879637
Number of successful extensions: 28028
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 27004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28014
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
