Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010429A_C01 KMC010429A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH19064.1|AAH19064 Similar to hypothetical protein FLJ14743 ... 36 0.19
ref|XP_045907.2| similar to KIAA1170 protein [Homo sapiens] 36 0.19
dbj|BAA86484.1| KIAA1170 protein [Homo sapiens] 36 0.19
gb|ZP_00104173.1| hypothetical protein [Prochlorococcus marinus ... 35 0.32
gb|AAH44205.1| Similar to RIKEN cDNA 6330569M22 gene [Danio rerio] 35 0.41
>gb|AAH19064.1|AAH19064 Similar to hypothetical protein FLJ14743 [Homo sapiens]
Length = 758
Score = 36.2 bits (82), Expect = 0.19
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 144 QLVIQINSTILLLLLNQFSL*HFYRFSHHKKQMVF*NSI 260
+++++ ST+LLLLL F L H Y+F + + +VF N I
Sbjct: 568 EIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHLVFANCI 606
>ref|XP_045907.2| similar to KIAA1170 protein [Homo sapiens]
Length = 834
Score = 36.2 bits (82), Expect = 0.19
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 144 QLVIQINSTILLLLLNQFSL*HFYRFSHHKKQMVF*NSI 260
+++++ ST+LLLLL F L H Y+F + + +VF N I
Sbjct: 568 EIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHLVFANCI 606
>dbj|BAA86484.1| KIAA1170 protein [Homo sapiens]
Length = 838
Score = 36.2 bits (82), Expect = 0.19
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 144 QLVIQINSTILLLLLNQFSL*HFYRFSHHKKQMVF*NSI 260
+++++ ST+LLLLL F L H Y+F + + +VF N I
Sbjct: 572 EIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHLVFANCI 610
>gb|ZP_00104173.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 485
Score = 35.4 bits (80), Expect = 0.32
Identities = 32/108 (29%), Positives = 47/108 (42%), Gaps = 3/108 (2%)
Frame = +2
Query: 83 RGTHNVMIATQKKKLSTIKLSTGNTDKFYNSLTSVEPVFPIAFLSFLTSQ-KTNGIL--K 253
R N +I + K L L + N + Y SL V F FLT+ KTN +L K
Sbjct: 165 RTNDNYIITSSNKTLILDALQSINIENKYISLKEVLNNFKNEHNIFLTNNFKTNELLNTK 224
Query: 254 QYQTKTDFHIPIM*KKKKESFK*SPLLPNNTQVCDCTLYKDEDLGNII 397
Y + + + + K + L NN ++ D LYK+ D NI+
Sbjct: 225 NYSLRKEDSLLTLFDFKDKEIILKSYLVNNNKISDIILYKNMDTVNIL 272
>gb|AAH44205.1| Similar to RIKEN cDNA 6330569M22 gene [Danio rerio]
Length = 813
Score = 35.0 bits (79), Expect = 0.41
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 144 QLVIQINSTILLLLLNQFSL*HFYRFSHHKKQMVF*NSI 260
+++++ S ILLLLL F L H Y+F + + +VF N I
Sbjct: 548 EIIVKAISAILLLLLKHFKLNHVYQFEYMAQHLVFANCI 586
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,877,303
Number of Sequences: 1393205
Number of extensions: 8067392
Number of successful extensions: 19574
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 18937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19567
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
