Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010410A_C01 KMC010410A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190779.1| putative protein; protein id: At3g52110.1 [Arab... 49 3e-05
emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaud... 35 0.59
sp|P41515|TP2A_CRIGR DNA TOPOISOMERASE II, ALPHA ISOZYME gi|3466... 35 0.59
emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaud... 35 0.59
emb|CAA76310.1| DNA topoisomerase II alpha [Cricetulus longicaud... 35 0.59
>ref|NP_190779.1| putative protein; protein id: At3g52110.1 [Arabidopsis thaliana]
gi|11288829|pir||T49090 hypothetical protein F4F15.220 -
Arabidopsis thaliana gi|4678940|emb|CAB41331.1| putative
protein [Arabidopsis thaliana]
Length = 362
Score = 49.3 bits (116), Expect = 3e-05
Identities = 31/80 (38%), Positives = 45/80 (55%), Gaps = 6/80 (7%)
Frame = -1
Query: 466 PKLRSTFSAQNLLGGREILSQITGFCSELKRLA-----RKGSKKGTSENAPRPNGVSEEE 302
P+L+ST SA+NL GR+I I+ FC ELKRLA R+ + K + + + + +
Sbjct: 137 PRLKSTQSARNLFSGRDIFGHISDFCYELKRLATRVTEREDTGKSEVKESHQVGEIVNQP 196
Query: 301 QKEKD-EEKRERVPLLVLKK 245
D E K+ER PLL + K
Sbjct: 197 YSVHDLELKKERKPLLEVSK 216
>emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
Length = 1526
Score = 35.0 bits (79), Expect = 0.59
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -1
Query: 424 GREILSQIT-GFCSELKRLARKGSKKGTSENAPRPNGVSEEEQKEKDEEKRERVPLLVLK 248
G+ ++ Q+T +E ++ RK K E P NG+ K++ E+K+++ P + K
Sbjct: 1211 GKRVIPQVTMEMKAEAEKKIRKKIKSENVEGTPTENGLELGSLKQRIEKKQKKEPGAMTK 1270
Query: 247 KGTTL 233
K TTL
Sbjct: 1271 KQTTL 1275
>sp|P41515|TP2A_CRIGR DNA TOPOISOMERASE II, ALPHA ISOZYME gi|346624|pir||A44406 DNA
topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - Chinese
hamster gi|191218|gb|AAA37023.1| DNA topoisomerase II
Length = 1526
Score = 35.0 bits (79), Expect = 0.59
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -1
Query: 424 GREILSQIT-GFCSELKRLARKGSKKGTSENAPRPNGVSEEEQKEKDEEKRERVPLLVLK 248
G+ ++ Q+T +E ++ RK K E P NG+ K++ E+K+++ P + K
Sbjct: 1211 GKRVIPQVTMEMKAEAEKKIRKKIKSENVEGTPTENGLELGSLKQRIEKKQKKEPGAMTK 1270
Query: 247 KGTTL 233
K TTL
Sbjct: 1271 KQTTL 1275
>emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
Length = 1526
Score = 35.0 bits (79), Expect = 0.59
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -1
Query: 424 GREILSQIT-GFCSELKRLARKGSKKGTSENAPRPNGVSEEEQKEKDEEKRERVPLLVLK 248
G+ ++ Q+T +E ++ RK K E P NG+ K++ E+K+++ P + K
Sbjct: 1211 GKRVIPQVTMEMKAEAEKKIRKKIKSENVEGTPTENGLELGSLKQRIEKKQKKEPGAMTK 1270
Query: 247 KGTTL 233
K TTL
Sbjct: 1271 KQTTL 1275
>emb|CAA76310.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
Length = 205
Score = 35.0 bits (79), Expect = 0.59
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -1
Query: 424 GREILSQIT-GFCSELKRLARKGSKKGTSENAPRPNGVSEEEQKEKDEEKRERVPLLVLK 248
G+ ++ Q+T +E ++ RK K E P NG+ K++ E+K+++ P + K
Sbjct: 83 GKRVIPQVTMEMKAEAEKKIRKKIKSENVEGTPTENGLELGSLKQRIEKKQKKEPGAMTK 142
Query: 247 KGTTL 233
K TTL
Sbjct: 143 KQTTL 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,354,596
Number of Sequences: 1393205
Number of extensions: 10312824
Number of successful extensions: 50606
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 41940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48133
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
