Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010409A_C01 KMC010409A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63721.1| unknown [Arabidopsis thaliana] 89 4e-17
ref|NP_566764.1| expressed protein; protein id: At3g25410.1, sup... 89 4e-17
dbj|BAB01312.1| contains similarity to transporter protein~gene_... 50 1e-05
dbj|BAB40160.1| P0707D10.18 [Oryza sativa (japonica cultivar-gro... 37 0.14
gb|AAO41972.1| putative Na+ dependent ileal bile acid transporte... 36 0.30
>gb|AAM63721.1| unknown [Arabidopsis thaliana]
Length = 431
Score = 88.6 bits (218), Expect = 4e-17
Identities = 45/52 (86%), Positives = 47/52 (89%)
Frame = -1
Query: 519 MQSSTLAGLLATPFLGSTQAVPAACSVVAMAIMGLCLASFWGAGHVIRDVLS 364
MQSSTLAGLLA+ FLGS+QAVPAACSVV MAIMGLCLASFWG G IRDVLS
Sbjct: 367 MQSSTLAGLLASQFLGSSQAVPAACSVVVMAIMGLCLASFWGNGFRIRDVLS 418
>ref|NP_566764.1| expressed protein; protein id: At3g25410.1, supported by cDNA:
26683., supported by cDNA: gi_19698908 [Arabidopsis
thaliana] gi|19698909|gb|AAL91190.1| unknown protein
[Arabidopsis thaliana] gi|22136206|gb|AAM91181.1|
unknown protein [Arabidopsis thaliana]
Length = 431
Score = 88.6 bits (218), Expect = 4e-17
Identities = 45/52 (86%), Positives = 47/52 (89%)
Frame = -1
Query: 519 MQSSTLAGLLATPFLGSTQAVPAACSVVAMAIMGLCLASFWGAGHVIRDVLS 364
MQSSTLAGLLA+ FLGS+QAVPAACSVV MAIMGLCLASFWG G IRDVLS
Sbjct: 367 MQSSTLAGLLASQFLGSSQAVPAACSVVVMAIMGLCLASFWGNGFRIRDVLS 418
>dbj|BAB01312.1| contains similarity to transporter protein~gene_id:MWL2.2
[Arabidopsis thaliana]
Length = 454
Score = 50.4 bits (119), Expect = 1e-05
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 519 MQSSTLAGLLATPFLGSTQAVPAACSVV 436
MQSSTLAGLLA+ FLGS+QAVPAACSVV
Sbjct: 367 MQSSTLAGLLASQFLGSSQAVPAACSVV 394
>dbj|BAB40160.1| P0707D10.18 [Oryza sativa (japonica cultivar-group)]
Length = 408
Score = 37.0 bits (84), Expect = 0.14
Identities = 23/42 (54%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = -1
Query: 519 MQSSTLAGLLATP-FLGSTQAVPAACSVVAMAIMGLCLASFW 397
MQSS L LLA F AVP+A SVV MA+ G LA FW
Sbjct: 352 MQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFW 393
>gb|AAO41972.1| putative Na+ dependent ileal bile acid transporter [Arabidopsis
thaliana]
Length = 271
Score = 35.8 bits (81), Expect = 0.30
Identities = 23/42 (54%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = -1
Query: 519 MQSSTLAGLLATP-FLGSTQAVPAACSVVAMAIMGLCLASFW 397
MQSS L LLA F AVP+A SVV MA+ G LA FW
Sbjct: 215 MQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSGLAVFW 256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,445,930
Number of Sequences: 1393205
Number of extensions: 9632849
Number of successful extensions: 24810
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 23867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24671
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
