Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010406A_C01 KMC010406A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD58680.1| 65kD microtubule associated protein [Daucus carota] 40 3e-04
emb|CAC17794.1| microtubule-associated protein MAP65-1a [Nicotia... 39 0.006
ref|NP_567756.1| putative protein; protein id: At4g26760.1, supp... 39 0.033
ref|NP_200334.1| putative protein; protein id: At5g55230.1 [Arab... 39 0.033
pir||T04799 hypothetical protein F10M23.100 - Arabidopsis thalia... 39 0.033
>emb|CAD58680.1| 65kD microtubule associated protein [Daucus carota]
Length = 576
Score = 40.0 bits (92), Expect(2) = 3e-04
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -1
Query: 413 EVEVERLDQFKGSRMKEIASR*QGELQ 333
EVEVERLDQ K SRMKEIA + Q EL+
Sbjct: 301 EVEVERLDQLKASRMKEIAFKRQAELE 327
Score = 25.0 bits (53), Expect(2) = 3e-04
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = -3
Query: 327 YLHVLM*KGAGWERIMALIDFGEFNQLSYFED 232
+ HV + A ERIMALID G+ +D
Sbjct: 332 HAHVEIDSEAARERIMALIDSGDVEPAELLDD 363
>emb|CAC17794.1| microtubule-associated protein MAP65-1a [Nicotiana tabacum]
Length = 580
Score = 38.9 bits (89), Expect(2) = 0.006
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -1
Query: 413 EVEVERLDQFKGSRMKEIASR*QGELQ 333
EVEVERLDQ K S+MKEIA + Q EL+
Sbjct: 301 EVEVERLDQLKASKMKEIAFKRQAELE 327
Score = 21.6 bits (44), Expect(2) = 0.006
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 321 HVLM*KGAGWERIMALIDFGEFNQLSYFED 232
HV + A E+IMALID G + D
Sbjct: 334 HVEIDTEAAREKIMALIDSGNVDPAELLAD 363
>ref|NP_567756.1| putative protein; protein id: At4g26760.1, supported by cDNA:
151418., supported by cDNA: gi_18377611 [Arabidopsis
thaliana] gi|21553564|gb|AAM62657.1|
microtubule-associated protein MAP65-1a [Arabidopsis
thaliana]
Length = 578
Score = 38.9 bits (89), Expect = 0.033
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -1
Query: 413 EVEVERLDQFKGSRMKEIASR*QGELQ 333
EVEV+RLDQ K SRMKEIA + Q EL+
Sbjct: 300 EVEVDRLDQLKSSRMKEIAFKKQSELE 326
>ref|NP_200334.1| putative protein; protein id: At5g55230.1 [Arabidopsis thaliana]
gi|9758120|dbj|BAB08592.1|
gene_id:MCO15.18~pir||T04799~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|28416713|gb|AAO42887.1| At5g55230 [Arabidopsis
thaliana]
Length = 587
Score = 38.9 bits (89), Expect = 0.033
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -1
Query: 413 EVEVERLDQFKGSRMKEIASR*QGELQ 333
EVEV+RLDQ K SRMKEIA + Q EL+
Sbjct: 300 EVEVDRLDQLKASRMKEIAFKKQSELE 326
>pir||T04799 hypothetical protein F10M23.100 - Arabidopsis thaliana
gi|4455199|emb|CAB36522.1| putative protein [Arabidopsis
thaliana] gi|7269528|emb|CAB79531.1| putative protein
[Arabidopsis thaliana]
Length = 473
Score = 38.9 bits (89), Expect = 0.033
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -1
Query: 413 EVEVERLDQFKGSRMKEIASR*QGELQ 333
EVEV+RLDQ K SRMKEIA + Q EL+
Sbjct: 310 EVEVDRLDQLKSSRMKEIAFKKQSELE 336
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,678,778
Number of Sequences: 1393205
Number of extensions: 8231369
Number of successful extensions: 18981
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18980
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
