Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010405A_C01 KMC010405A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL18930.1|AF429389_1 hydroxymethylglutaryl coenzyme A syntha... 166 2e-40
gb|AAK73854.1| hydroxymethylglutaryl coenzyme A synthase [Hevea ... 162 1e-39
gb|AAM98150.1| hydroxymethylglutaryl-CoA synthase [Arabidopsis t... 142 2e-33
ref|NP_192919.1| hydroxymethylglutaryl-CoA synthase; protein id:... 142 2e-33
emb|CAA58763.1| hydroxymethylglutaryl-CoA synthase [Arabidopsis ... 142 2e-33
>gb|AAL18930.1|AF429389_1 hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
Length = 464
Score = 166 bits (419), Expect = 2e-40
Identities = 81/110 (73%), Positives = 98/110 (88%), Gaps = 4/110 (3%)
Frame = -1
Query: 498 FSYGSGLTATMFSLQLRDGKHPFSLSNIATVMDVAGKLKSRKEFPPEKFVEIMKLMEHRY 319
FSYGSGLTATMFSL+L +G+HPFSLSNIA+VM+VAGKLK+R E PPEKFV+IMKLMEHRY
Sbjct: 355 FSYGSGLTATMFSLRLHEGQHPFSLSNIASVMNVAGKLKARHELPPEKFVDIMKLMEHRY 414
Query: 318 GSKEYVTSKETSLLSSGTFYLTEVDNMYRRFYEQK----TSESALSAHGH 181
G+K++VTSK+ SLL+SGT+YLTEVD++YRRFY QK T E+ L A+GH
Sbjct: 415 GAKDFVTSKDCSLLASGTYYLTEVDSLYRRFYAQKAVGNTVENGLLANGH 464
>gb|AAK73854.1| hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
Length = 464
Score = 162 bits (411), Expect = 1e-39
Identities = 80/110 (72%), Positives = 96/110 (86%), Gaps = 4/110 (3%)
Frame = -1
Query: 498 FSYGSGLTATMFSLQLRDGKHPFSLSNIATVMDVAGKLKSRKEFPPEKFVEIMKLMEHRY 319
FSYGSGLTATMFSL+L +G+HPFSLSNIA+VM+VAGKLK+R E PPEKFV IMKLMEHRY
Sbjct: 355 FSYGSGLTATMFSLRLHEGQHPFSLSNIASVMNVAGKLKARHELPPEKFVNIMKLMEHRY 414
Query: 318 GSKEYVTSKETSLLSSGTFYLTEVDNMYRRFYEQK----TSESALSAHGH 181
G+K++V SK+ SLL+SGT+YLTEVD++YRRFY QK T E+ L A+GH
Sbjct: 415 GAKDFVRSKDCSLLASGTYYLTEVDSLYRRFYAQKAVGNTVENGLLANGH 464
>gb|AAM98150.1| hydroxymethylglutaryl-CoA synthase [Arabidopsis thaliana]
Length = 406
Score = 142 bits (358), Expect = 2e-33
Identities = 71/108 (65%), Positives = 89/108 (81%), Gaps = 2/108 (1%)
Frame = -1
Query: 498 FSYGSGLTATMFSLQLRDGKHPFSLSNIATVMDVAGKLKSRKEFPPEKFVEIMKLMEHRY 319
FSYGSG TATMFSL+L D K PFS+SNIA+VMDV GKLK+R E+ PEKFVE MKLMEHRY
Sbjct: 300 FSYGSGSTATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRY 359
Query: 318 GSKEYVTSKE--TSLLSSGTFYLTEVDNMYRRFYEQKTSESALSAHGH 181
G+K++VT+KE LL+ GT+YL EVD++YRRFY +K + ++ A+GH
Sbjct: 360 GAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRRFYGKKGEDGSV-ANGH 406
>ref|NP_192919.1| hydroxymethylglutaryl-CoA synthase; protein id: At4g11820.1,
supported by cDNA: 22413., supported by cDNA: gi_4098520
[Arabidopsis thaliana] gi|21431772|sp|P54873|HMCS_ARATH
Hydroxymethylglutaryl-CoA synthase (HMG-CoA synthase)
(3-hydroxy-3-methylglutaryl coenzyme A synthase)
gi|7436679|pir||T09341 hydroxymethylglutaryl-CoA
synthase (EC 4.1.3.5) - Arabidopsis thaliana
gi|4098521|gb|AAD00297.1| HMG-CoA synthase [Arabidopsis
thaliana] gi|4098523|gb|AAD00298.1| HMG-CoA synthase
[Arabidopsis thaliana] gi|5002517|emb|CAB44320.1|
hydroxymethylglutaryl-CoA synthase [Arabidopsis
thaliana] gi|7267882|emb|CAB78225.1|
hydroxymethylglutaryl-CoA synthase [Arabidopsis
thaliana]
Length = 461
Score = 142 bits (358), Expect = 2e-33
Identities = 71/108 (65%), Positives = 89/108 (81%), Gaps = 2/108 (1%)
Frame = -1
Query: 498 FSYGSGLTATMFSLQLRDGKHPFSLSNIATVMDVAGKLKSRKEFPPEKFVEIMKLMEHRY 319
FSYGSG TATMFSL+L D K PFS+SNIA+VMDV GKLK+R E+ PEKFVE MKLMEHRY
Sbjct: 355 FSYGSGSTATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRY 414
Query: 318 GSKEYVTSKE--TSLLSSGTFYLTEVDNMYRRFYEQKTSESALSAHGH 181
G+K++VT+KE LL+ GT+YL EVD++YRRFY +K + ++ A+GH
Sbjct: 415 GAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRRFYGKKGEDGSV-ANGH 461
>emb|CAA58763.1| hydroxymethylglutaryl-CoA synthase [Arabidopsis thaliana]
gi|1586548|prf||2204245A hydroxy methylglutaryl CoA
synthase
Length = 461
Score = 142 bits (358), Expect = 2e-33
Identities = 71/108 (65%), Positives = 89/108 (81%), Gaps = 2/108 (1%)
Frame = -1
Query: 498 FSYGSGLTATMFSLQLRDGKHPFSLSNIATVMDVAGKLKSRKEFPPEKFVEIMKLMEHRY 319
FSYGSG TATMFSL+L D K PFS+SNIA+VMDV GKLK+R E+ PEKFVE MKLMEHRY
Sbjct: 355 FSYGSGSTATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRY 414
Query: 318 GSKEYVTSKE--TSLLSSGTFYLTEVDNMYRRFYEQKTSESALSAHGH 181
G+K++VT+KE LL+ GT+YL EVD++YRRFY +K + ++ A+GH
Sbjct: 415 GAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRRFYGKKGEDGSV-ANGH 461
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,563,584
Number of Sequences: 1393205
Number of extensions: 7552940
Number of successful extensions: 16187
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 15374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16140
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
