Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010379A_C01 KMC010379A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P45732|PALY_STYHU Phenylalanine ammonia-lyase gi|556424|gb|AA... 234 6e-61
prf||2001451A Phe ammonia lyase 234 8e-61
sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1 gi|282927|pir||... 234 8e-61
sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1 gi|99944|pir|... 229 2e-59
sp|P45734|PALY_TRISU Phenylalanine ammonia-lyase gi|484062|gb|AA... 228 4e-59
>sp|P45732|PALY_STYHU Phenylalanine ammonia-lyase gi|556424|gb|AAA99500.1| phenylalanine
ammonia lyase
Length = 715
Score = 234 bits (597), Expect = 6e-61
Identities = 119/152 (78%), Positives = 132/152 (86%), Gaps = 2/152 (1%)
Frame = +1
Query: 151 DAAFCV--NNGVGLGVGPTTPHHDPLNWGAAAEAMKGSHLDEVKRMVEEYRKPVVRLGGE 324
DA FC+ NNG P HDPLNW AAAEA+KGSHLDEVKRMV EYRKP+V LGG+
Sbjct: 8 DATFCLTANNG-------QQPRHDPLNWAAAAEALKGSHLDEVKRMVSEYRKPLVNLGGQ 60
Query: 325 TLTIAQVAAVAAHDQGAVTVELSESSRAGVEASRNWVRDSMNKGTDSYGVTTGFGATSHR 504
TLTI+QVAA+AA+DQG V+V+LSE+SRAGV+AS +WV DSMN GTDSYGVTTGFGATSHR
Sbjct: 61 TLTISQVAAIAANDQG-VSVQLSEASRAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHR 119
Query: 505 RTKQGGALQKELIRFLNAGIFGNGTESNCTLP 600
RTKQGGALQKELIRFLNAGIFGNGTE+NCTLP
Sbjct: 120 RTKQGGALQKELIRFLNAGIFGNGTETNCTLP 151
>prf||2001451A Phe ammonia lyase
Length = 723
Score = 234 bits (596), Expect = 8e-61
Identities = 124/168 (73%), Positives = 135/168 (79%)
Frame = +1
Query: 97 MAAATTIITNGNGHGHHDDAAFCVNNGVGLGVGPTTPHHDPLNWGAAAEAMKGSHLDEVK 276
M IT NG+ +FCV N + + DPLNWG AAEAMKGSHLDEVK
Sbjct: 1 METVAAAITKNNGY-----ESFCVTNAKNNNMKVNSA--DPLNWGVAAEAMKGSHLDEVK 53
Query: 277 RMVEEYRKPVVRLGGETLTIAQVAAVAAHDQGAVTVELSESSRAGVEASRNWVRDSMNKG 456
RMVEEYRKPVVRLGGETLTI+QVAA+AAHD G V VELSES+RAGV+AS +WV +SMNKG
Sbjct: 54 RMVEEYRKPVVRLGGETLTISQVAAIAAHDHG-VKVELSESARAGVKASSDWVMESMNKG 112
Query: 457 TDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLP 600
TDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTES+ TLP
Sbjct: 113 TDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLP 160
>sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1 gi|282927|pir||S25303 phenylalanine
ammonia-lyase (EC 4.3.1.5) - garden pea
gi|217980|dbj|BAA00885.1| phenylalanine ammonia-lyase
[Pisum sativum] gi|217982|dbj|BAA00886.1| phenylalanine
ammonia-lyase [Pisum sativum]
Length = 723
Score = 234 bits (596), Expect = 8e-61
Identities = 124/168 (73%), Positives = 135/168 (79%)
Frame = +1
Query: 97 MAAATTIITNGNGHGHHDDAAFCVNNGVGLGVGPTTPHHDPLNWGAAAEAMKGSHLDEVK 276
M IT NG+ +FCV N + + DPLNWG AAEAMKGSHLDEVK
Sbjct: 1 METVAAAITKNNGY-----ESFCVTNAKNNNMKVNSA--DPLNWGVAAEAMKGSHLDEVK 53
Query: 277 RMVEEYRKPVVRLGGETLTIAQVAAVAAHDQGAVTVELSESSRAGVEASRNWVRDSMNKG 456
RMVEEYRKPVVRLGGETLTI+QVAA+AAHD G V VELSES+RAGV+AS +WV +SMNKG
Sbjct: 54 RMVEEYRKPVVRLGGETLTISQVAAIAAHDHG-VKVELSESARAGVKASSDWVMESMNKG 112
Query: 457 TDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLP 600
TDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTES+ TLP
Sbjct: 113 TDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLP 160
>sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1 gi|99944|pir||S22991 phenylalanine
ammonia-lyase (EC 4.3.1.5) 1 - soybean
gi|18377|emb|CAA37129.1| phenylalanine ammonia-lyase
[Glycine max]
Length = 713
Score = 229 bits (584), Expect = 2e-59
Identities = 121/160 (75%), Positives = 131/160 (81%)
Frame = +1
Query: 121 TNGNGHGHHDDAAFCVNNGVGLGVGPTTPHHDPLNWGAAAEAMKGSHLDEVKRMVEEYRK 300
TNG H + +FC++ G ++DPLNWGAAAEAMKGSHLDEVKRMV EYRK
Sbjct: 4 TNG-----HQNGSFCLSTAKG--------NNDPLNWGAAAEAMKGSHLDEVKRMVAEYRK 50
Query: 301 PVVRLGGETLTIAQVAAVAAHDQGAVTVELSESSRAGVEASRNWVRDSMNKGTDSYGVTT 480
PVVRLGGETLTIAQVAAVA HD G V VELSES+R GV+AS WV +SMN GTDSYGVTT
Sbjct: 51 PVVRLGGETLTIAQVAAVAGHDHG-VAVELSESAREGVKASSEWVMNSMNNGTDSYGVTT 109
Query: 481 GFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLP 600
GFGATSHRRTKQGGALQKELIRFLNAGIFGNGTES+ TLP
Sbjct: 110 GFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLP 149
>sp|P45734|PALY_TRISU Phenylalanine ammonia-lyase gi|484062|gb|AAA17993.1| phenylalanine
ammonia-lyase
Length = 725
Score = 228 bits (582), Expect = 4e-59
Identities = 115/129 (89%), Positives = 121/129 (93%)
Frame = +1
Query: 214 DPLNWGAAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTIAQVAAVAAHDQGAVTVELS 393
DPLNWG AAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTI+QVAA+AAHD TVELS
Sbjct: 35 DPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHD--GATVELS 92
Query: 394 ESSRAGVEASRNWVRDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGN 573
ES+RAGV+AS +WV +SMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGN
Sbjct: 93 ESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGN 152
Query: 574 GTESNCTLP 600
GTESN TLP
Sbjct: 153 GTESNHTLP 161
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 658,450,614
Number of Sequences: 1393205
Number of extensions: 19273729
Number of successful extensions: 210499
Number of sequences better than 10.0: 4303
Number of HSP's better than 10.0 without gapping: 87608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162680
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
