Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010378A_C01 KMC010378A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T44595 alcaligin synthesis protein alcC [validated] - Borde... 32 3.1
>pir||T44595 alcaligin synthesis protein alcC [validated] - Bordetella
bronchiseptica gi|1778030|gb|AAB40620.1| AlcC
[Bordetella bronchiseptica]
Length = 618
Score = 32.3 bits (72), Expect = 3.1
Identities = 16/44 (36%), Positives = 26/44 (58%), Gaps = 3/44 (6%)
Frame = -3
Query: 225 PDVVKMISMFVLIFNGFFRILFLVLVCAFC---HDHWLLLVCRV 103
P+ K++++FV +F G+FR L +LV HD W L+ R+
Sbjct: 495 PEAYKLLTIFVDVFEGYFRHLTQILVETELMPEHDFWRLVAGRI 538
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,956,673
Number of Sequences: 1393205
Number of extensions: 8005279
Number of successful extensions: 16625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16618
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
