Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010377A_C01 KMC010377A_c01
(349 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Ara... 37 0.064
ref|NP_180585.1| small nuclear ribonucleoprotein U2B, putative; ... 37 0.064
ref|NP_172177.2| small nuclear ribonucleoprotein U2B, putative; ... 37 0.084
pir||C86204 hypothetical protein [imported] - Arabidopsis thalia... 37 0.084
pir||S34448 small nuclear ribonucleoprotein U2B'' - potato gi|16... 36 0.14
>gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
Length = 232
Score = 37.0 bits (84), Expect = 0.064
Identities = 15/17 (88%), Positives = 17/17 (99%)
Frame = -1
Query: 349 GFKITPQNPMIITFAKK 299
GFKITPQNPM+I+FAKK
Sbjct: 216 GFKITPQNPMVISFAKK 232
>ref|NP_180585.1| small nuclear ribonucleoprotein U2B, putative; protein id:
At2g30260.1, supported by cDNA: 34995. [Arabidopsis
thaliana] gi|25294326|pir||C84706 probable small nuclear
ribonucleoprotein U2B [imported] - Arabidopsis thaliana
gi|2347192|gb|AAC16931.1| putative small nuclear
ribonucleoprotein U2B [Arabidopsis thaliana]
gi|27765024|gb|AAO23633.1| At2g30260 [Arabidopsis
thaliana]
Length = 232
Score = 37.0 bits (84), Expect = 0.064
Identities = 15/17 (88%), Positives = 17/17 (99%)
Frame = -1
Query: 349 GFKITPQNPMIITFAKK 299
GFKITPQNPM+I+FAKK
Sbjct: 216 GFKITPQNPMVISFAKK 232
>ref|NP_172177.2| small nuclear ribonucleoprotein U2B, putative; protein id:
At1g06960.1 [Arabidopsis thaliana]
gi|23296313|gb|AAN13038.1| putative spliceosomal protein
(U2B) [Arabidopsis thaliana]
Length = 229
Score = 36.6 bits (83), Expect = 0.084
Identities = 14/17 (82%), Positives = 17/17 (99%)
Frame = -1
Query: 349 GFKITPQNPMIITFAKK 299
GFKITPQNPM+++FAKK
Sbjct: 213 GFKITPQNPMVVSFAKK 229
>pir||C86204 hypothetical protein [imported] - Arabidopsis thaliana
gi|8954049|gb|AAF82223.1|AC067971_31 Strong similarity
to a small nuclear ribonucleoprotein U2B'' - potato from
Solanum tuberosum gb|M72892. It contains an RNA
recognition motif PF|00076. ESTs gb|AA041158 and
gb|AI992475 come from this gene. [Arabidopsis thaliana]
Length = 247
Score = 36.6 bits (83), Expect = 0.084
Identities = 14/17 (82%), Positives = 17/17 (99%)
Frame = -1
Query: 349 GFKITPQNPMIITFAKK 299
GFKITPQNPM+++FAKK
Sbjct: 231 GFKITPQNPMVVSFAKK 247
>pir||S34448 small nuclear ribonucleoprotein U2B'' - potato
gi|169589|gb|AAA33847.1| spliceosomal protein
Length = 231
Score = 35.8 bits (81), Expect = 0.14
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = -1
Query: 349 GFKITPQNPMIITFAKK 299
GFKITPQNPM IT+AKK
Sbjct: 215 GFKITPQNPMAITYAKK 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 259,660,822
Number of Sequences: 1393205
Number of extensions: 4370154
Number of successful extensions: 9204
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9203
length of database: 448,689,247
effective HSP length: 91
effective length of database: 321,907,592
effective search space used: 7725782208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
