Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010374A_C01 KMC010374A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190937.1| putative protein; protein id: At3g53690.1, supp... 62 7e-09
gb|AAO37196.1| hypothetical protein [Arabidopsis thaliana] 60 2e-08
ref|NP_190144.1| putative protein; protein id: At3g45580.1 [Arab... 45 0.001
ref|NP_193702.1| putative protein; protein id: At4g19670.1 [Arab... 44 0.001
ref|NP_200833.1| putative protein; protein id: At5g60250.1 [Arab... 43 0.004
>ref|NP_190937.1| putative protein; protein id: At3g53690.1, supported by cDNA:
108517. [Arabidopsis thaliana] gi|11357799|pir||T45909
hypothetical protein F4P12.390 - Arabidopsis thaliana
gi|6729520|emb|CAB67676.1| putative protein [Arabidopsis
thaliana] gi|21536688|gb|AAM61020.1| unknown
[Arabidopsis thaliana]
Length = 320
Score = 62.0 bits (149), Expect = 7e-09
Identities = 21/34 (61%), Positives = 28/34 (81%)
Frame = -1
Query: 662 EGCMYMKCRCGHAFCYNCGAPNKNPSHHCNKCHR 561
+GC+YMKCRCG AFCYNCG P+++ +H+C C R
Sbjct: 287 QGCLYMKCRCGLAFCYNCGTPSRDHTHYCYNCKR 320
>gb|AAO37196.1| hypothetical protein [Arabidopsis thaliana]
Length = 132
Score = 60.5 bits (145), Expect = 2e-08
Identities = 21/32 (65%), Positives = 25/32 (77%)
Frame = -1
Query: 662 EGCMYMKCRCGHAFCYNCGAPNKNPSHHCNKC 567
EGC+YMKCRCG FCYNCG P+K +H+C C
Sbjct: 94 EGCLYMKCRCGLXFCYNCGTPSKXHTHYCYSC 125
>ref|NP_190144.1| putative protein; protein id: At3g45580.1 [Arabidopsis thaliana]
gi|11357923|pir||T47498 hypothetical protein F9K21.160 -
Arabidopsis thaliana gi|6996261|emb|CAB75487.1| putative
protein [Arabidopsis thaliana]
Length = 408
Score = 44.7 bits (104), Expect = 0.001
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -1
Query: 662 EGCMYMKCRCGHAFCYNCGA 603
EGCM++ CRCGH FCY CGA
Sbjct: 348 EGCMHITCRCGHQFCYKCGA 367
>ref|NP_193702.1| putative protein; protein id: At4g19670.1 [Arabidopsis thaliana]
gi|7487075|pir||T04748 hypothetical protein T16H5.30 -
Arabidopsis thaliana gi|3250676|emb|CAA19684.1| putative
protein [Arabidopsis thaliana]
gi|7268763|emb|CAB78969.1| putative protein [Arabidopsis
thaliana]
Length = 532
Score = 44.3 bits (103), Expect = 0.001
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = -1
Query: 662 EGCMYMKCRCGHAFCYNCGAPNKNPSHHC 576
+GC +M CRCGH FCY+CGA + C
Sbjct: 389 QGCNHMTCRCGHEFCYSCGAEYREGQQTC 417
>ref|NP_200833.1| putative protein; protein id: At5g60250.1 [Arabidopsis thaliana]
gi|8885575|dbj|BAA97505.1|
emb|CAB75487.1~gene_id:F15L12.13~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 655
Score = 42.7 bits (99), Expect = 0.004
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 662 EGCMYMKCRCGHAFCYNCGAP-NKNPSHHCNKC 567
+GC ++ CRCGH FCYNCG NK N+C
Sbjct: 481 QGCNHITCRCGHEFCYNCGGGWNKIMGTCLNRC 513
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,206,829
Number of Sequences: 1393205
Number of extensions: 10695595
Number of successful extensions: 22403
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 21802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22396
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
