Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010368A_C01 KMC010368A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61144.1| unknown [Arabidopsis thaliana] 42 0.004
ref|NP_567068.1| putative protein; protein id: At3g58520.1, supp... 42 0.004
pir||T45672 hypothetical protein F14P22.110 - Arabidopsis thalia... 42 0.004
gb|EAA27817.1| predicted protein [Neurospora crassa] 38 0.077
ref|XP_220593.1| similar to Rho guanine nucleotide exchange fact... 37 0.10
>gb|AAM61144.1| unknown [Arabidopsis thaliana]
Length = 391
Score = 42.0 bits (97), Expect = 0.004
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = -2
Query: 510 FYHVMKTGLLYRGDGSIPNLEGGALLL----DEIGDEGSEEEEVETSDEFSE 367
FYHVM+TG LYR G + + LLL D++ +EGSEEEE+ E E
Sbjct: 336 FYHVMRTGFLYRARG-LGMVSKEELLLDRPEDDLEEEGSEEEEIVEGSELEE 386
>ref|NP_567068.1| putative protein; protein id: At3g58520.1, supported by cDNA:
112338., supported by cDNA: gi_15810015 [Arabidopsis
thaliana] gi|15810016|gb|AAL06935.1|
AT3g58520/F14P22_110 [Arabidopsis thaliana]
gi|22135767|gb|AAM91040.1| AT3g58520/F14P22_110
[Arabidopsis thaliana]
Length = 418
Score = 42.0 bits (97), Expect = 0.004
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = -2
Query: 510 FYHVMKTGLLYRGDGSIPNLEGGALLL----DEIGDEGSEEEEVETSDEFSE 367
FYHVM+TG LYR G + + LLL D++ +EGSEEEE+ E E
Sbjct: 363 FYHVMRTGFLYRARG-LGMVSKEELLLDRPEDDLEEEGSEEEEIVEGSELEE 413
>pir||T45672 hypothetical protein F14P22.110 - Arabidopsis thaliana
gi|6735369|emb|CAB68190.1| putative protein [Arabidopsis
thaliana]
Length = 394
Score = 42.0 bits (97), Expect = 0.004
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = -2
Query: 510 FYHVMKTGLLYRGDGSIPNLEGGALLL----DEIGDEGSEEEEVETSDEFSE 367
FYHVM+TG LYR G + + LLL D++ +EGSEEEE+ E E
Sbjct: 339 FYHVMRTGFLYRARG-LGMVSKEELLLDRPEDDLEEEGSEEEEIVEGSELEE 389
>gb|EAA27817.1| predicted protein [Neurospora crassa]
Length = 632
Score = 37.7 bits (86), Expect = 0.077
Identities = 23/55 (41%), Positives = 32/55 (57%), Gaps = 7/55 (12%)
Frame = +2
Query: 332 KPH-----SLSDPETSPSENSS--LVSTSSSSEPSSPISSSSKAPPSRLGIEPSP 475
KPH S ++P T PS SS LV+ S ++ +SP ++S+ PPS L PSP
Sbjct: 34 KPHPERTLSYTEPTTCPSIPSSFPLVTPSKDTDSTSPSTASATTPPSSLQATPSP 88
>ref|XP_220593.1| similar to Rho guanine nucleotide exchange factor (GEF) 15; Rho
guanine exchange factor (GEF) 15 [Homo sapiens] [Rattus
norvegicus]
Length = 834
Score = 37.4 bits (85), Expect = 0.10
Identities = 23/76 (30%), Positives = 35/76 (45%)
Frame = +2
Query: 266 PKKIFEVSHCVARQINTNLHH*KPHSLSDPETSPSENSSLVSTSSSSEPSSPISSSSKAP 445
PK + ++S+ + + T++ P P + S S S + P SP S+ S +P
Sbjct: 43 PKALPQISNDASASVCTSIFWEPPTGSLKPPALLPPSVSRASLDSQTSPDSPSSTPSPSP 102
Query: 446 PSRLGIEPSPR*RSPV 493
SR I P P SPV
Sbjct: 103 VSRRSISPEPAPCSPV 118
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,965,043
Number of Sequences: 1393205
Number of extensions: 8861331
Number of successful extensions: 63867
Number of sequences better than 10.0: 247
Number of HSP's better than 10.0 without gapping: 44591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57558
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
