Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010367A_C01 KMC010367A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188935.1| ADP-ribosylation factor, putative; protein id: ... 154 4e-37
ref|NP_648201.1| CG7197-PA [Drosophila melanogaster] gi|7295126|... 107 7e-23
ref|NP_083742.2| RIKEN cDNA 4930587A11 [Mus musculus] gi|2633430... 107 9e-23
dbj|BAC32305.1| unnamed protein product [Mus musculus] 107 9e-23
ref|XP_167671.1| similar to ARF-like protein 5 [Rattus norvegicu... 107 9e-23
>ref|NP_188935.1| ADP-ribosylation factor, putative; protein id: At3g22950.1,
supported by cDNA: 24097., supported by cDNA:
gi_17381003, supported by cDNA: gi_20465872 [Arabidopsis
thaliana] gi|11994726|dbj|BAB03042.1| contains
similarity to ADP-ribosylation factor~gene_id:F5N5.14
[Arabidopsis thaliana] gi|17381004|gb|AAL36314.1|
putative ADP-ribosylation factor [Arabidopsis thaliana]
gi|20465873|gb|AAM20041.1| putative ADP-ribosylation
factor [Arabidopsis thaliana] gi|21592454|gb|AAM64405.1|
ADP-ribosylation factor, putative [Arabidopsis thaliana]
Length = 183
Score = 154 bits (390), Expect = 4e-37
Identities = 73/87 (83%), Positives = 82/87 (93%)
Frame = -1
Query: 479 RARISIMKDELFRLLGHDELKQSVILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQ 300
RARIS MKDEL RLLGH++L+ SVILVFANKQD+KDAMTPAEITDAL+LHSIK+HDWHIQ
Sbjct: 97 RARISFMKDELARLLGHEDLQNSVILVFANKQDLKDAMTPAEITDALNLHSIKNHDWHIQ 156
Query: 299 ACCALSGEGLYDGLGWIAQKVTGKAAT 219
A CA++GEGLYDGLGWIAQKVTGKA +
Sbjct: 157 ASCAVTGEGLYDGLGWIAQKVTGKATS 183
>ref|NP_648201.1| CG7197-PA [Drosophila melanogaster] gi|7295126|gb|AAF50451.1|
CG7197-PA [Drosophila melanogaster]
gi|20152027|gb|AAM11373.1| LD31204p [Drosophila
melanogaster]
Length = 179
Score = 107 bits (267), Expect = 7e-23
Identities = 46/84 (54%), Positives = 66/84 (77%)
Frame = -1
Query: 479 RARISIMKDELFRLLGHDELKQSVILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQ 300
R R+++ ++EL+R+L H++L ++ +LV+ANKQD+K +M+ AEI+ L L SIK H WHIQ
Sbjct: 96 RERLAVTREELYRMLQHEDLSKASLLVYANKQDLKGSMSAAEISRQLDLTSIKKHQWHIQ 155
Query: 299 ACCALSGEGLYDGLGWIAQKVTGK 228
ACCAL+GEGLY GL WI Q++ K
Sbjct: 156 ACCALTGEGLYQGLEWIVQRIKNK 179
>ref|NP_083742.2| RIKEN cDNA 4930587A11 [Mus musculus] gi|26334309|dbj|BAC30872.1|
unnamed protein product [Mus musculus]
gi|26343679|dbj|BAC35496.1| unnamed protein product [Mus
musculus] gi|26381970|dbj|BAB30204.2| unnamed protein
product [Mus musculus]
Length = 180
Score = 107 bits (266), Expect = 9e-23
Identities = 45/81 (55%), Positives = 65/81 (79%)
Frame = -1
Query: 479 RARISIMKDELFRLLGHDELKQSVILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQ 300
R R++I K+EL+R+L H++L+++ +L+FANKQD+K MT AEI+ L+L SIKDH WHIQ
Sbjct: 97 RERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQ 156
Query: 299 ACCALSGEGLYDGLGWIAQKV 237
+CCAL+GEGL GL W+ ++
Sbjct: 157 SCCALTGEGLCQGLEWMTSRI 177
>dbj|BAC32305.1| unnamed protein product [Mus musculus]
Length = 171
Score = 107 bits (266), Expect = 9e-23
Identities = 45/81 (55%), Positives = 65/81 (79%)
Frame = -1
Query: 479 RARISIMKDELFRLLGHDELKQSVILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQ 300
R R++I K+EL+R+L H++L+++ +L+FANKQD+K MT AEI+ L+L SIKDH WHIQ
Sbjct: 88 RERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQ 147
Query: 299 ACCALSGEGLYDGLGWIAQKV 237
+CCAL+GEGL GL W+ ++
Sbjct: 148 SCCALTGEGLCQGLEWMTSRI 168
>ref|XP_167671.1| similar to ARF-like protein 5 [Rattus norvegicus] [Homo sapiens]
gi|14041850|dbj|BAB55011.1| unnamed protein product
[Homo sapiens] gi|18848193|gb|AAH24163.1| similar to
ADP-ribosylation factor-like 5 [Homo sapiens]
gi|21667501|gb|AAM74076.1|AF494061_1
ADP-ribosylation-like factor 8 [Homo sapiens]
gi|26333747|dbj|BAC30591.1| unnamed protein product [Mus
musculus] gi|26334989|dbj|BAC31195.1| unnamed protein
product [Mus musculus]
Length = 179
Score = 107 bits (266), Expect = 9e-23
Identities = 45/81 (55%), Positives = 65/81 (79%)
Frame = -1
Query: 479 RARISIMKDELFRLLGHDELKQSVILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQ 300
R R++I K+EL+R+L H++L+++ +L+FANKQD+K MT AEI+ L+L SIKDH WHIQ
Sbjct: 96 RERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQ 155
Query: 299 ACCALSGEGLYDGLGWIAQKV 237
+CCAL+GEGL GL W+ ++
Sbjct: 156 SCCALTGEGLCQGLEWMTSRI 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,439,928
Number of Sequences: 1393205
Number of extensions: 7742212
Number of successful extensions: 22452
Number of sequences better than 10.0: 248
Number of HSP's better than 10.0 without gapping: 21790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22402
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
