Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010352A_C01 KMC010352A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189098.1| protein kinase, putative; protein id: At3g24550... 42 0.004
gb|AAK43886.1|AF370509_1 protein kinase-like protein [Arabidopsi... 41 0.007
pir||JC2301 hypothetical 47.8K protein - Pneumocystis carinii gi... 41 0.010
gb|AAO51828.1| similar to Plasmodium falciparum. Hypothetical pr... 40 0.013
gb|AAM33652.1|AF508983_1 mastigoneme-like protein [Chlamydomonas... 40 0.021
>ref|NP_189098.1| protein kinase, putative; protein id: At3g24550.1, supported by
cDNA: 17909., supported by cDNA: gi_13877616, supported
by cDNA: gi_15983764, supported by cDNA: gi_16649062,
supported by cDNA: gi_20260331 [Arabidopsis thaliana]
gi|9294050|dbj|BAB02007.1| protein kinase-like protein
[Arabidopsis thaliana] gi|15983765|gb|AAL10479.1|
AT3g24550/MOB24_8 [Arabidopsis thaliana]
gi|16649063|gb|AAL24383.1| protein kinase-like protein
[Arabidopsis thaliana] gi|20260332|gb|AAM13064.1|
unknown protein [Arabidopsis thaliana]
gi|22136228|gb|AAM91192.1| protein kinase-like protein
[Arabidopsis thaliana]
Length = 652
Score = 42.0 bits (97), Expect = 0.004
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 134 PASSSSSPPPSTSASSSSPATTSQRPP-LPKPQRPNPLQPEL 256
P ++ SSPPPS S +S+SP +S PP LP P P L P L
Sbjct: 36 PTTTPSSPPPSPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPL 77
Score = 35.0 bits (79), Expect = 0.53
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 134 PASSSSSPPPSTSASSSSPATT---SQRPPLPKPQRPNPLQP 250
P+++S+SPPPS+ S P + S PPLP+P P+ P
Sbjct: 47 PSTNSTSPPPSSPLPPSLPPPSPPGSLTPPLPQPSPSAPITP 88
>gb|AAK43886.1|AF370509_1 protein kinase-like protein [Arabidopsis thaliana]
Length = 652
Score = 41.2 bits (95), Expect = 0.007
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 134 PASSSSSPPPSTSASSSSPATTSQRPP-LPKPQRPNPLQPEL 256
P ++ SSPPPS S +S+SP +S PP LP P P L P +
Sbjct: 36 PTTTPSSPPPSPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPI 77
Score = 34.3 bits (77), Expect = 0.90
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 134 PASSSSSPPPSTSASSSSPATT---SQRPPLPKPQRPNPLQP 250
P+++S+SPPPS+ S P + S PP+P+P P+ P
Sbjct: 47 PSTNSTSPPPSSPLPPSLPPPSPPGSLTPPIPQPSPSAPITP 88
>pir||JC2301 hypothetical 47.8K protein - Pneumocystis carinii
gi|559721|dbj|BAA06706.1| ORF-3 [Pneumocystis carinii]
Length = 430
Score = 40.8 bits (94), Expect = 0.010
Identities = 21/44 (47%), Positives = 26/44 (58%)
Frame = +2
Query: 128 NHPASSSSSPPPSTSASSSSPATTSQRPPLPKPQRPNPLQPELE 259
N P+ SS P TS SS+ +T+S PP P P RP P QP+ E
Sbjct: 228 NPPSYPSSQQDPDTSLSSNPTSTSSSEPPPPPPPRPEP-QPQPE 270
Score = 31.2 bits (69), Expect = 7.6
Identities = 18/42 (42%), Positives = 22/42 (51%)
Frame = +2
Query: 134 PASSSSSPPPSTSASSSSPATTSQRPPLPKPQRPNPLQPELE 259
P +S SS P STS+S P PP P+PQ QPE +
Sbjct: 239 PDTSLSSNPTSTSSSEPPPPP----PPRPEPQPQPETQPETQ 276
Score = 31.2 bits (69), Expect = 7.6
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +2
Query: 125 TNHPASSSSS----PPPSTSASSSSPATTSQRPPLPKPQRPNPLQPELE 259
+++P S+SSS PPP P T + P PQ P P Q E +
Sbjct: 244 SSNPTSTSSSEPPPPPPPRPEPQPQPETQPETQPPQPPQPPQPPQSETQ 292
>gb|AAO51828.1| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 803
Score = 40.4 bits (93), Expect = 0.013
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 128 NHPASSSSSPPPSTSASSSSPATTSQRPPLPKPQRPNP 241
N +S SSSPPPS+S+SSSSP++ S P PNP
Sbjct: 569 NDSSSPSSSPPPSSSSSSSSPSSPSSTSPSLLSSIPNP 606
>gb|AAM33652.1|AF508983_1 mastigoneme-like protein [Chlamydomonas reinhardtii]
Length = 1997
Score = 39.7 bits (91), Expect = 0.021
Identities = 22/52 (42%), Positives = 23/52 (43%)
Frame = +2
Query: 86 PKIKINSQNP*I*TNHPASSSSSPPPSTSASSSSPATTSQRPPLPKPQRPNP 241
PK Q+P P S S PPP S SP S RPP P P PNP
Sbjct: 1856 PKTARTEQSP-----PPPSPSPPPPPPASPRPPSPNPPSPRPPSPAPPSPNP 1902
Score = 33.5 bits (75), Expect = 1.5
Identities = 17/37 (45%), Positives = 18/37 (47%)
Frame = +2
Query: 140 SSSSSPPPSTSASSSSPATTSQRPPLPKPQRPNPLQP 250
+ S PPPS S PA S RPP P P P P P
Sbjct: 1861 TEQSPPPPSPSPPPPPPA--SPRPPSPNPPSPRPPSP 1895
Score = 32.7 bits (73), Expect = 2.6
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = +2
Query: 134 PASSSSSPPPSTSASSSSPATTSQRPPLPKPQRPNP 241
PA S +PPP++ S P+ RP P P+RP+P
Sbjct: 1895 PAPPSPNPPPTSQPPSPPPSPPPPRP--PPPRRPHP 1928
Score = 32.3 bits (72), Expect = 3.4
Identities = 17/39 (43%), Positives = 18/39 (45%)
Frame = +2
Query: 134 PASSSSSPPPSTSASSSSPATTSQRPPLPKPQRPNPLQP 250
P S SPPP AS P S PP P+P P P P
Sbjct: 1865 PPPPSPSPPPPPPASPRPP---SPNPPSPRPPSPAPPSP 1900
Score = 32.0 bits (71), Expect = 4.5
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 134 PASSSSSP-PPSTSASSSSPATTSQRPPLPKPQRPNPLQP 250
P+ + SP PPS + S +P TSQ PP P P P P P
Sbjct: 1883 PSPNPPSPRPPSPAPPSPNPPPTSQ-PPSPPPSPPPPRPP 1921
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,108,905
Number of Sequences: 1393205
Number of extensions: 11616309
Number of successful extensions: 138738
Number of sequences better than 10.0: 836
Number of HSP's better than 10.0 without gapping: 73084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122765
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
