Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010342A_C01 KMC010342A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200467.2| F-box protein; protein id: At5g56560.1 [Arabido... 44 0.001
ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabido... 43 0.002
ref|NP_198674.1| putative protein; protein id: At5g38580.1 [Arab... 41 0.009
ref|NP_190923.1| putative protein; protein id: At3g53550.1 [Arab... 40 0.015
ref|NP_194364.2| F-box protein; protein id: At4g26340.1 [Arabido... 40 0.020
>ref|NP_200467.2| F-box protein; protein id: At5g56560.1 [Arabidopsis thaliana]
Length = 607
Score = 43.9 bits (102), Expect = 0.001
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = -1
Query: 498 YVDKYDVWPDPGFVPECFRSHLRKCFLKGFR*VECPRRFARYVMPNSASLRTMKF---CS 328
Y D +W +P V +C HL + + E R A Y++ N+ L+ F C
Sbjct: 523 YNDPMTLWEEPAVVAKCLSEHLEIFEWRQYEGTEQERNVAGYILANATCLKMATFSTRCR 582
Query: 327 GPNHRRTLEMMTELTSYPRSSAVCELSYE 241
NHR M+ +L S R S C L ++
Sbjct: 583 NRNHR----MLKKLKSMDRVSKACRLVFD 607
>ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabidopsis thaliana]
gi|10177843|dbj|BAB11272.1|
emb|CAB62440.1~gene_id:MCD7.20~similar to unknown
protein [Arabidopsis thaliana]
Length = 430
Score = 43.1 bits (100), Expect = 0.002
Identities = 27/86 (31%), Positives = 39/86 (44%), Gaps = 2/86 (2%)
Frame = -1
Query: 495 VDKYDVWPDPGFVPECFRSHLRKCFLKGFR*VECPRRFARYVMPNSASLRTMKFCS--GP 322
VD W P VP+C S L ++ E ++ Y++ NS L+TM S
Sbjct: 344 VDVQTQWEQPSSVPKCLISSLETVEWIDYKGREVEKKVVMYLLENSRQLKTMAIRSLKST 403
Query: 321 NHRRTLEMMTELTSYPRSSAVCELSY 244
N L+M+ EL+S R C LS+
Sbjct: 404 NDNEKLKMLQELSSIHRICTKCGLSF 429
>ref|NP_198674.1| putative protein; protein id: At5g38580.1 [Arabidopsis thaliana]
gi|10176826|dbj|BAB10148.1|
gene_id:MBB18.13~pir||T06729~similar to unknown protein
[Arabidopsis thaliana]
Length = 168
Score = 40.8 bits (94), Expect = 0.009
Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 2/80 (2%)
Frame = -1
Query: 477 WPDPGFVPECFRSHLRKCFLKGFR*VECPRRFARYVMPNSASLRTMKFCSGPNHR--RTL 304
W P FVPEC S L+ + + R A Y++ N+ L+T + + L
Sbjct: 84 WNQPNFVPECLLSSLQTLLWSRYFGRQQDRDIAVYILKNACHLKTATILADTDEHDVPNL 143
Query: 303 EMMTELTSYPRSSAVCELSY 244
+M+ EL R+S +C+L +
Sbjct: 144 QMIKELALSLRTSVICQLVF 163
>ref|NP_190923.1| putative protein; protein id: At3g53550.1 [Arabidopsis thaliana]
gi|11357794|pir||T45895 hypothetical protein F4P12.250 -
Arabidopsis thaliana gi|6729506|emb|CAB67662.1| putative
protein [Arabidopsis thaliana]
Length = 256
Score = 40.0 bits (92), Expect = 0.015
Identities = 21/72 (29%), Positives = 36/72 (49%), Gaps = 1/72 (1%)
Frame = -1
Query: 477 WPDPGFVPECFRSHLRKCFLKGFR*VECPRRFARYVMPNSASLRTMKF-CSGPNHRRTLE 301
W P VPEC +HL+ KG+R + + RY++ NS LR + N+ +T++
Sbjct: 165 WNQPSSVPECLSNHLKIFEWKGYRGRKEEKEIVRYILANSKCLRRIGVSLKSTNNHKTIK 224
Query: 300 MMTELTSYPRSS 265
+ ++ SS
Sbjct: 225 ELESMSRVSTSS 236
>ref|NP_194364.2| F-box protein; protein id: At4g26340.1 [Arabidopsis thaliana]
gi|23296372|gb|AAN13055.1| unknown protein [Arabidopsis
thaliana]
Length = 419
Score = 39.7 bits (91), Expect = 0.020
Identities = 26/80 (32%), Positives = 36/80 (44%), Gaps = 1/80 (1%)
Frame = -1
Query: 477 WPDPGFVPECFRSHLRKCFLKGFR*VECPRRFARYVMPNSASLRTMKFC-SGPNHRRTLE 301
W P VPEC L G++ R A YV+ N+A LRT KF +
Sbjct: 340 WKLPSSVPECLLFSLEAFEWIGYKGRRGDREVATYVLKNAACLRTAKFSPESTDVGEKYH 399
Query: 300 MMTELTSYPRSSAVCELSYE 241
M+ EL S P +S +L ++
Sbjct: 400 MLKELASVPTASTSSKLLFD 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,752,359
Number of Sequences: 1393205
Number of extensions: 7667327
Number of successful extensions: 20294
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 19441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20189
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
