Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010340A_C01 KMC010340A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566397.1| expressed protein; protein id: At3g11690.1, sup... 57 2e-12
ref|NP_196256.1| putative protein; protein id: At5g06380.1 [Arab... 52 2e-08
pir||S29611 pollen-preferential protein - trumpet lily gi|19453|... 40 6e-07
dbj|BAA84636.1| unnamed protein product [Oryza sativa (japonica ... 42 0.005
dbj|BAB07964.1| P0406H10.14 [Oryza sativa (japonica cultivar-gro... 39 0.032
>ref|NP_566397.1| expressed protein; protein id: At3g11690.1, supported by cDNA:
gi_14334501 [Arabidopsis thaliana]
gi|6041821|gb|AAF02136.1|AC009918_8 unknown protein
[Arabidopsis thaliana]
Length = 252
Score = 57.4 bits (137), Expect(2) = 2e-12
Identities = 28/42 (66%), Positives = 30/42 (70%), Gaps = 2/42 (4%)
Frame = -2
Query: 367 STAPEPDNDD--ALALEKEMWERFYNTGFWRSSSRRESESSP 248
+T E D DD LALEKEMW RFY GFWRS S+RES SSP
Sbjct: 165 TTEEETDEDDEAVLALEKEMWNRFYGAGFWRSPSQRESVSSP 206
Score = 36.2 bits (82), Expect(2) = 2e-12
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = -1
Query: 551 KVPAGLCRNMLKKRRRRRVIKEGTPLAPPRRRQCSCGTCDDM-----SGPLRIHPMCAND 387
KVP G+CR ++ RRR++++K G + PP G + M + IHP+ ++D
Sbjct: 86 KVPKGICRRAIRSRRRKQLVKNG--ILPPLPTD---GKNERMQRVFQNSEFAIHPLDSDD 140
Query: 386 ASD 378
SD
Sbjct: 141 VSD 143
>ref|NP_196256.1| putative protein; protein id: At5g06380.1 [Arabidopsis thaliana]
gi|9758418|dbj|BAB08960.1|
gb|AAF02136.1~gene_id:MHF15.10~similar to unknown
protein [Arabidopsis thaliana]
Length = 146
Score = 51.6 bits (122), Expect(2) = 2e-08
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = -2
Query: 385 PPTSNASTAPEPDNDDA-LALEKEMWERFYNTGFWRSSSRRESESSPEKH 239
P S E + D+A +ALEKEMW RFY+ GFWRS S+ E+ SSP+ +
Sbjct: 97 PLESRDEEEEEEEEDEAVIALEKEMWSRFYSGGFWRSLSQAETASSPKNN 146
Score = 28.1 bits (61), Expect(2) = 2e-08
Identities = 10/22 (45%), Positives = 17/22 (76%)
Frame = -1
Query: 551 KVPAGLCRNMLKKRRRRRVIKE 486
K+P GLCR +++ RR+R+ K+
Sbjct: 55 KLPRGLCRRAIRRIRRKRLAKK 76
>pir||S29611 pollen-preferential protein - trumpet lily gi|19453|emb|CAA78966.1|
pollen preferential protein [Lilium longiflorum]
gi|19455|emb|CAA78977.1| pollen preferential protein
[Lilium longiflorum] gi|308904|gb|AAA33399.1| pollen
preferential protein
Length = 182
Score = 40.0 bits (92), Expect(2) = 6e-07
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -2
Query: 421 GLFASTPCVPTTPPTSNASTAPEPDNDDALALEKEMWERFYNTGFWRSSSRRES 260
G+ + P P T P+ + S + E+EMW FY+ GFWRS S++ES
Sbjct: 135 GVPSFVPRTPETWPSKSPSV-------EVAEKEEEMWAEFYSAGFWRSPSQKES 181
Score = 34.7 bits (78), Expect(2) = 6e-07
Identities = 15/26 (57%), Positives = 19/26 (72%)
Frame = -1
Query: 551 KVPAGLCRNMLKKRRRRRVIKEGTPL 474
K+PAGLCR L ++RR+RV K T L
Sbjct: 95 KLPAGLCRRALSQKRRKRVKKRSTTL 120
>dbj|BAA84636.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|6016868|dbj|BAA85211.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 527
Score = 42.0 bits (97), Expect = 0.005
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -2
Query: 352 PDNDDALALEKEMWERFYNTGFWRSSSRRESESSP 248
P + + +EK++W FY+ GFWRS S+RE SP
Sbjct: 158 PMTEHLVDMEKQVWASFYSAGFWRSPSQREDRRSP 192
>dbj|BAB07964.1| P0406H10.14 [Oryza sativa (japonica cultivar-group)]
Length = 2058
Score = 39.3 bits (90), Expect = 0.032
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 21/110 (19%)
Frame = -3
Query: 429 HERASSHPPHVCQRRLRHQTPPPRRSLITTMRSLWRR-----RCGSDSTTLDSGEALQ-- 271
H S H P + RR + Q PPP ++L+ ++ LWR RC + L AL
Sbjct: 67 HHPHSQHQPLLPTRRQQQQPPPPYQALVASLAPLWREGLFLVRCSVFAAALSVAAALSWY 126
Query: 270 --------EENQNLPLKNTNLNTKLQLH-HLQLVRNISH-----HECKFG 163
E++ LP L LQ HL VR++S H C G
Sbjct: 127 AQLRARSFVESRLLPAACAALGEFLQREVHLGRVRSVSPLGITLHTCSIG 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,012,677
Number of Sequences: 1393205
Number of extensions: 12108944
Number of successful extensions: 53506
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 48685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53265
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
