Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010335A_C01 KMC010335A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197460.1| putative protein; protein id: At5g19590.1 [Arab... 102 2e-21
dbj|BAB91825.1| B1103C09.15 [Oryza sativa (japonica cultivar-gro... 79 4e-14
gb|AAM62843.1| unknown [Arabidopsis thaliana] 50 2e-05
ref|NP_563663.1| Expressed protein; protein id: At1g02813.1, sup... 50 2e-05
ref|NP_192145.1| putative protein; protein id: At4g02360.1 [Arab... 49 2e-05
>ref|NP_197460.1| putative protein; protein id: At5g19590.1 [Arabidopsis thaliana]
gi|27311703|gb|AAO00817.1| putative protein [Arabidopsis
thaliana]
Length = 151
Score = 102 bits (254), Expect = 2e-21
Identities = 49/64 (76%), Positives = 57/64 (88%)
Frame = -2
Query: 501 GKIVKGRIAELNGIRVRAFFQWWSITGIRSSGDNIVFEVGMVTAKYPSKNFDDSPACEGQ 322
G+I +G+IAEL GIRVRAFF+ WSITGIRSSGDN+VFEV +TAKYPSKNFD+S CEG+
Sbjct: 88 GRISQGKIAELQGIRVRAFFKSWSITGIRSSGDNLVFEVAGITAKYPSKNFDESLDCEGK 147
Query: 321 RSSS 310
RSSS
Sbjct: 148 RSSS 151
>dbj|BAB91825.1| B1103C09.15 [Oryza sativa (japonica cultivar-group)]
gi|20804631|dbj|BAB92321.1| P0451D05.23 [Oryza sativa
(japonica cultivar-group)]
Length = 160
Score = 78.6 bits (192), Expect = 4e-14
Identities = 35/63 (55%), Positives = 49/63 (77%)
Frame = -2
Query: 501 GKIVKGRIAELNGIRVRAFFQWWSITGIRSSGDNIVFEVGMVTAKYPSKNFDDSPACEGQ 322
G++ RI+ L+GIRVRAFF+WWSITGIR+ GD +VFEVG V+AK+P+++F+ S C +
Sbjct: 98 GRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLECPAK 157
Query: 321 RSS 313
S
Sbjct: 158 ADS 160
>gb|AAM62843.1| unknown [Arabidopsis thaliana]
Length = 149
Score = 49.7 bits (117), Expect = 2e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = -2
Query: 501 GKIVKGRIAELNGIRVRAFFQWWSITGIRSSGDNIVFEVGMVTAKYPSKNFDDSPAC 331
G I +GR+ L G+ V+ F W +I+ + GD++ F VG + ++ SK F DSP C
Sbjct: 80 GIITRGRVIRLIGVSVKVLFFWINISEVSRDGDDVEFFVGAASEEFSSKYFVDSPKC 136
>ref|NP_563663.1| Expressed protein; protein id: At1g02813.1, supported by cDNA:
1632. [Arabidopsis thaliana]
Length = 149
Score = 49.7 bits (117), Expect = 2e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = -2
Query: 501 GKIVKGRIAELNGIRVRAFFQWWSITGIRSSGDNIVFEVGMVTAKYPSKNFDDSPAC 331
G I +GR+ L G+ V+ F W +I+ + GD++ F VG + ++ SK F DSP C
Sbjct: 80 GIITRGRVIRLIGVSVKVLFFWINISEVSRDGDDVEFFVGAASEEFSSKYFVDSPKC 136
>ref|NP_192145.1| putative protein; protein id: At4g02360.1 [Arabidopsis thaliana]
gi|7487008|pir||T01314 hypothetical protein T14P8.17 -
Arabidopsis thaliana gi|3193298|gb|AAC19282.1| T14P8.17
gene product [Arabidopsis thaliana]
gi|7268996|emb|CAB80729.1| putative protein [Arabidopsis
thaliana]
Length = 154
Score = 49.3 bits (116), Expect = 2e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = -2
Query: 501 GKIVKGRIAELNGIRVRAFFQWWSITGIRSSGDNIVFEVGMVTAKYPSKNFDDSPAC 331
G I G + L G+ V+ F W +I + G ++ F VG+ +A +P+ NF++SP C
Sbjct: 84 GVISPGHVKNLKGVSVKVLFFWVNIAEVSLDGADLDFSVGIASASFPAANFEESPQC 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,453,967
Number of Sequences: 1393205
Number of extensions: 8833824
Number of successful extensions: 24763
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 23677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24691
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
