Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010323A_C01 KMC010323A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E71076 hypothetical protein PH0877 - Pyrococcus horikoshii ... 39 0.029
prf||2204386A myosin VI:SUBUNIT=heavy chain 38 0.084
ref|NP_032688.1| myosin VI; Snell's waltzer [Mus musculus] gi|13... 38 0.084
ref|NP_062100.1| intersectin 1; intersectin (SH3 domain protein ... 36 0.24
gb|AAD31026.1|AF132672_1 EH-domain/SH3-domain containing protein... 36 0.24
>pir||E71076 hypothetical protein PH0877 - Pyrococcus horikoshii
gi|3257288|dbj|BAA29971.1| 128aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 128
Score = 39.3 bits (90), Expect = 0.029
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 12/111 (10%)
Frame = +3
Query: 228 SSLFMLCSDLLLAL---LMILLGSNSTLQLELLSSLALLTLSNS-LSVSPLITIFF---- 383
SS ++ S L+L+L ++IL GS S +A++T+S S ++ SP+ TIF
Sbjct: 22 SSTTIVPSGLVLSLPSSVIILFGS---------SPMAIITVSASNVTYSPVPTIFLFPLL 72
Query: 384 -SSSNGNLLSNL*VLV---TSPLNSLSWPKDCLLWPSSLVAGLCFIPASIS 524
SS+G +LSNL L +SP+NS K+ PSS CFI +S++
Sbjct: 73 SRSSSGFVLSNLTALTLPFSSPMNSTGCRKNSNFTPSS---SACFISSSLA 120
>prf||2204386A myosin VI:SUBUNIT=heavy chain
Length = 1265
Score = 37.7 bits (86), Expect = 0.084
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = -3
Query: 463 SLGQDKEFNGEVTRTQRLDSKLPLELEKKMVIRGDTERELDKVRRAKDESSSSCKVELDP 284
+L + K+ E R +R+ ++ E E+K RE D+ RR K+E K+E++P
Sbjct: 915 ALQKKKQQEEEAERLRRIQEEM--EKERK-------RREEDEERRRKEEEERRMKLEMEP 965
Query: 283 KRIIRRARSKSEHSMKREDKDHR 215
KR + + E KRED + R
Sbjct: 966 KR-----KQEEEERKKREDDEKR 983
>ref|NP_032688.1| myosin VI; Snell's waltzer [Mus musculus]
gi|13431710|sp|Q64331|MYO6_MOUSE Myosin VI
gi|11276962|pir||A59299 unconventional myosin VI - mouse
gi|1322280|gb|AAB00194.1| unconventional myosin VI [Mus
musculus]
Length = 1265
Score = 37.7 bits (86), Expect = 0.084
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = -3
Query: 463 SLGQDKEFNGEVTRTQRLDSKLPLELEKKMVIRGDTERELDKVRRAKDESSSSCKVELDP 284
+L + K+ E R +R+ ++ E E+K RE D+ RR K+E K+E++P
Sbjct: 915 ALQKKKQQEEEAERLRRIQEEM--EKERK-------RREEDEERRRKEEEERRMKLEMEP 965
Query: 283 KRIIRRARSKSEHSMKREDKDHR 215
KR + + E KRED + R
Sbjct: 966 KR-----KQEEEERKKREDDEKR 983
>ref|NP_062100.1| intersectin 1; intersectin (SH3 domain protein 1A) [Rattus
norvegicus] gi|20138462|sp|Q9WVE9|ITN1_RAT Intersectin 1
(EH domain and SH3 domain regulator of endocytosis 1)
gi|4835853|gb|AAD30271.1|AF127798_1 EH- and SH3-domain
containing protein EHSH1 [Rattus norvegicus]
Length = 1217
Score = 36.2 bits (82), Expect = 0.24
Identities = 19/66 (28%), Positives = 38/66 (56%)
Frame = -3
Query: 418 QRLDSKLPLELEKKMVIRGDTERELDKVRRAKDESSSSCKVELDPKRIIRRARSKSEHSM 239
Q + K LELEK++ + + ER+ ++ RR + E + K EL+ +R + R++ + +
Sbjct: 398 QEQERKRQLELEKQLEKQRELERQREEERRKEIERREAAKRELERQRQLEWERNRRQELL 457
Query: 238 KREDKD 221
+ +KD
Sbjct: 458 TQRNKD 463
>gb|AAD31026.1|AF132672_1 EH-domain/SH3-domain containing protein [Rattus norvegicus]
Length = 1146
Score = 36.2 bits (82), Expect = 0.24
Identities = 19/66 (28%), Positives = 38/66 (56%)
Frame = -3
Query: 418 QRLDSKLPLELEKKMVIRGDTERELDKVRRAKDESSSSCKVELDPKRIIRRARSKSEHSM 239
Q + K LELEK++ + + ER+ ++ RR + E + K EL+ +R + R++ + +
Sbjct: 398 QEQERKRQLELEKQLEKQRELERQREEERRKEIERREAAKRELERQRQLEWERNRRQELL 457
Query: 238 KREDKD 221
+ +KD
Sbjct: 458 TQRNKD 463
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,532,764
Number of Sequences: 1393205
Number of extensions: 8424982
Number of successful extensions: 22429
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 21361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22341
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
