Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010322A_C01 KMC010322A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00004500.1| hypothetical protein [Rhodobacter sphaeroides] 37 0.15
gb|EAA30514.1| predicted protein [Neurospora crassa] 33 2.2
emb|CAC19028.1| homeobox transcription factor [Platynereis dumer... 32 2.9
ref|NP_000456.1| BRCA1 associated RING domain 1; BRCA1-associate... 32 4.9
ref|XP_090433.1| hypothetical protein XP_090433 [Homo sapiens] 31 6.5
>gb|ZP_00004500.1| hypothetical protein [Rhodobacter sphaeroides]
Length = 473
Score = 36.6 bits (83), Expect = 0.15
Identities = 15/31 (48%), Positives = 19/31 (60%)
Frame = +1
Query: 334 HQQGPTPSLNNLGLAHSNGRGGGVQQAPTLW 426
HQ GP ++ LGL H RGGG++ P LW
Sbjct: 4 HQSGPLDRVHVLGLRHGPLRGGGLRAGPALW 34
>gb|EAA30514.1| predicted protein [Neurospora crassa]
Length = 1272
Score = 32.7 bits (73), Expect = 2.2
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = -2
Query: 415 VPAEPLPLSHSSGPSPSCSKKELGLAGVGSG 323
VPA P P S SSGPSP+ S+ L G GSG
Sbjct: 1023 VPAGPSPGS-SSGPSPASSRSSTSLLGSGSG 1052
>emb|CAC19028.1| homeobox transcription factor [Platynereis dumerilii]
Length = 205
Score = 32.3 bits (72), Expect = 2.9
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 346 PTPSLNNLGLAHSNGRGGGVQ-QAPTLWWP 432
PTP++N +G A S G GG Q +P++W P
Sbjct: 174 PTPTVNGMGSAGSGGGSGGSQTNSPSIWSP 203
>ref|NP_000456.1| BRCA1 associated RING domain 1; BRCA1-associated RING domain gene
1; BRCA1-associated RING domain 1 [Homo sapiens]
gi|13123980|sp|Q99728|BAR1_HUMAN BRCA1-associated RING
domain protein 1 (BARD-1) gi|1710175|gb|AAB38316.1|
BRCA1-associated RING domain protein [Homo sapiens]
Length = 777
Score = 31.6 bits (70), Expect = 4.9
Identities = 20/55 (36%), Positives = 27/55 (48%)
Frame = -2
Query: 469 ERFDTGCYSEGEEATKEWVPAEPLPLSHSSGPSPSCSKKELGLAGVGSGRKQKKI 305
+R T S + K+ VP+E +PL S P PSC +K G SGRK +
Sbjct: 334 KRCRTSILSTSGDFVKQTVPSENIPLPECSSP-PSCKRK----VGGTSGRKNSNM 383
>ref|XP_090433.1| hypothetical protein XP_090433 [Homo sapiens]
Length = 458
Score = 31.2 bits (69), Expect = 6.5
Identities = 17/37 (45%), Positives = 21/37 (55%), Gaps = 8/37 (21%)
Frame = -3
Query: 453 AVTVKGKRPPKSG--------CLLNPSPSPIRVGQAQ 367
AVT++G R PKSG CLL S SP +G A+
Sbjct: 134 AVTIQGHREPKSGACQSNQKICLLRKSQSPAALGSAR 170
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,878,830
Number of Sequences: 1393205
Number of extensions: 10363684
Number of successful extensions: 27952
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27936
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
