Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010315A_C01 KMC010315A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P11043|AROA_PETHY 3-phosphoshikimate 1-carboxyvinyltransferas... 199 3e-50
gb|AAL27698.1|AF371966_1 5-enolpyruvylshikimate-3-phosphate synt... 191 5e-48
gb|AAL27697.1| 5-enolpyruvylshikimate-3-phosphate synthase [Dicl... 189 2e-47
sp|P05466|AROA_ARATH 3-phosphoshikimate 1-carboxyvinyltransferas... 186 2e-46
ref|NP_182055.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synth... 186 2e-46
>sp|P11043|AROA_PETHY 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
synthase) gi|66620|pir||XUPJVS 3-phosphoshikimate
1-carboxyvinyltransferase (EC 2.5.1.19) precursor -
garden petunia gi|169191|gb|AAA33699.1|
5-enolpyruvylshikimate-3-phosphate synthase precursor
Length = 516
Score = 199 bits (505), Expect = 3e-50
Identities = 115/194 (59%), Positives = 146/194 (74%), Gaps = 6/194 (3%)
Frame = +3
Query: 39 VSRIHNLPQTTPILHHSSN---PQKPKSANSISLRSH-LWGSSKSWSLKHKNGGFIGN-C 203
+++I+N+ Q L+ +SN PQ PKS++ + S L S+ S + K+ F+ C
Sbjct: 1 MAQINNMAQGIQTLNPNSNFHKPQVPKSSSFLVFGSKKLKNSANSMLVLKKDSIFMQKFC 60
Query: 204 DVGNGYSGVFKVSASVAAAEKPSTAPEIVLEPIREIAGTITLPGSKSLSNRILLLAALSE 383
F++SASVA A+KPS EIVL+PI+EI+GT+ LPGSKSLSNRILLLAALSE
Sbjct: 61 S--------FRISASVATAQKPS---EIVLQPIKEISGTVKLPGSKSLSNRILLLAALSE 109
Query: 384 GTTVVDNLLNSEDVHYMLGALRTLGLHVEDDKATKQAIVEGCGGLFPT-SESKDEVNLFL 560
GTTVVDNLL+S+D+HYMLGAL+TLGLHVE+D A ++A+VEGCGGLFP ESK+E+ LFL
Sbjct: 110 GTTVVDNLLSSDDIHYMLGALKTLGLHVEEDSANQRAVVEGCGGLFPVGKESKEEIQLFL 169
Query: 561 GNAGTAMRPLTAAV 602
GNAGTAMRPLTAAV
Sbjct: 170 GNAGTAMRPLTAAV 183
>gb|AAL27698.1|AF371966_1 5-enolpyruvylshikimate-3-phosphate synthase B [Dicliptera
chinensis]
Length = 516
Score = 191 bits (486), Expect = 5e-48
Identities = 108/192 (56%), Positives = 133/192 (69%), Gaps = 1/192 (0%)
Frame = +3
Query: 30 MAQVSRIHNLPQTTPILHHSSNPQKPKSANSISLRSHLWGSSKSWSLKHKNGGFIGNCDV 209
M+Q NLP+ S+ P S + + L +KSW+L I +V
Sbjct: 1 MSQAIHTLNLPKFQIPNSKPSSAASPSFNGSSNFSNSL---NKSWNLTK-----ISVSNV 52
Query: 210 GNGYSGVFKVSASVAAAEKPSTAPEIVLEPIREIAGTITLPGSKSLSNRILLLAALSEGT 389
G +V+A+ AEKP PEIVL+PI++I+GT+ LPGSKSLSNR+LLLAALSEGT
Sbjct: 53 GKSRQLQLQVAAAAKTAEKPPAVPEIVLQPIKDISGTVKLPGSKSLSNRVLLLAALSEGT 112
Query: 390 TVVDNLLNSEDVHYMLGALRTLGLHVEDDKATKQAIVEGCGGLFPTS-ESKDEVNLFLGN 566
TVV+NLL+SED+HYMLGALRTLGLHVE+DKA ++A+VEGC G FP S E KDE+ LFLG
Sbjct: 113 TVVENLLSSEDIHYMLGALRTLGLHVEEDKANQKAVVEGCVGQFPASKEGKDEIQLFLGK 172
Query: 567 AGTAMRPLTAAV 602
AGTAMRPLTAAV
Sbjct: 173 AGTAMRPLTAAV 184
>gb|AAL27697.1| 5-enolpyruvylshikimate-3-phosphate synthase [Dicliptera chinensis]
Length = 516
Score = 189 bits (480), Expect = 2e-47
Identities = 109/192 (56%), Positives = 132/192 (67%), Gaps = 1/192 (0%)
Frame = +3
Query: 30 MAQVSRIHNLPQTTPILHHSSNPQKPKSANSISLRSHLWGSSKSWSLKHKNGGFIGNCDV 209
M+Q NLP+ S+ P S + + L +KSW+L I +V
Sbjct: 1 MSQAIHTLNLPKFQIPNSKPSSAASPSFNGSSNFSNSL---NKSWNLTK-----ISVSNV 52
Query: 210 GNGYSGVFKVSASVAAAEKPSTAPEIVLEPIREIAGTITLPGSKSLSNRILLLAALSEGT 389
G +V A+ AEKP PEIVL+PI++I+GT+ LPGSKSLSNR+LLLAALSEGT
Sbjct: 53 GKSRQLQLQVVAAAKTAEKPPAVPEIVLQPIKDISGTVKLPGSKSLSNRVLLLAALSEGT 112
Query: 390 TVVDNLLNSEDVHYMLGALRTLGLHVEDDKATKQAIVEGCGGLFPTS-ESKDEVNLFLGN 566
TVV+NLL+SED+HYMLGALRTLGL VE+DKA ++A+VEGC G FP S E KDEV LFLGN
Sbjct: 113 TVVENLLSSEDIHYMLGALRTLGLAVEEDKANQKAVVEGCVGQFPASKEGKDEVQLFLGN 172
Query: 567 AGTAMRPLTAAV 602
AGTAMRPLTAAV
Sbjct: 173 AGTAMRPLTAAV 184
>sp|P05466|AROA_ARATH 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
synthase) gi|295790|emb|CAA29828.1| EPSP [Arabidopsis
thaliana]
Length = 520
Score = 186 bits (473), Expect = 2e-46
Identities = 111/196 (56%), Positives = 136/196 (68%), Gaps = 5/196 (2%)
Frame = +3
Query: 30 MAQVSRIHNLPQTTPILHHSSNPQKPKSANSISLRSH----LWGSSKSWSLKHKNGGFIG 197
MAQVSRI N Q ++ + S + KS S+SL++ + S SW LK IG
Sbjct: 1 MAQVSRICNGVQNPSLISNLSKSSQRKSPLSVSLKTQQHPRAYPISSSWGLKKSGMTLIG 60
Query: 198 NCDVGNGYSGVFKVSASVAAAEKPSTAPEIVLEPIREIAGTITLPGSKSLSNRILLLAAL 377
+ KV +SV+ AEK S EIVL+PIREI+G I LPGSKSLSNRILLLAAL
Sbjct: 61 S------ELRPLKVMSSVSTAEKAS---EIVLQPIREISGLIKLPGSKSLSNRILLLAAL 111
Query: 378 SEGTTVVDNLLNSEDVHYMLGALRTLGLHVEDDKATKQAIVEGCGGLFPTS-ESKDEVNL 554
SEGTTVVDNLLNS+D++YML AL+ LGL+VE D +A+VEGCGG+FP S +SK ++ L
Sbjct: 112 SEGTTVVDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDSKSDIEL 171
Query: 555 FLGNAGTAMRPLTAAV 602
+LGNAGTAMRPLTAAV
Sbjct: 172 YLGNAGTAMRPLTAAV 187
>ref|NP_182055.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase; protein id:
At2g45300.1 [Arabidopsis thaliana]
gi|25287162|pir||H84888 hypothetical protein At2g45300
[imported] - Arabidopsis thaliana
gi|2583124|gb|AAB82633.1|
5-enolpyruvylshikimate-3-phosphate (EPSP) synthase
[Arabidopsis thaliana]
Length = 520
Score = 186 bits (473), Expect = 2e-46
Identities = 111/196 (56%), Positives = 136/196 (68%), Gaps = 5/196 (2%)
Frame = +3
Query: 30 MAQVSRIHNLPQTTPILHHSSNPQKPKSANSISLRSH----LWGSSKSWSLKHKNGGFIG 197
MAQVSRI N Q ++ + S + KS S+SL++ + S SW LK IG
Sbjct: 1 MAQVSRICNGVQNPSLISNLSKSSQRKSPLSVSLKTQQHPRAYPISSSWGLKKSGMTLIG 60
Query: 198 NCDVGNGYSGVFKVSASVAAAEKPSTAPEIVLEPIREIAGTITLPGSKSLSNRILLLAAL 377
+ KV +SV+ AEK S EIVL+PIREI+G I LPGSKSLSNRILLLAAL
Sbjct: 61 S------ELRPLKVMSSVSTAEKAS---EIVLQPIREISGLIKLPGSKSLSNRILLLAAL 111
Query: 378 SEGTTVVDNLLNSEDVHYMLGALRTLGLHVEDDKATKQAIVEGCGGLFPTS-ESKDEVNL 554
SEGTTVVDNLLNS+D++YML AL+ LGL+VE D +A+VEGCGG+FP S +SK ++ L
Sbjct: 112 SEGTTVVDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDSKSDIEL 171
Query: 555 FLGNAGTAMRPLTAAV 602
+LGNAGTAMRPLTAAV
Sbjct: 172 YLGNAGTAMRPLTAAV 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,781,631
Number of Sequences: 1393205
Number of extensions: 13323383
Number of successful extensions: 49522
Number of sequences better than 10.0: 254
Number of HSP's better than 10.0 without gapping: 46246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49378
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
