Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010310A_C01 KMC010310A_c01
(434 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM91894.1| hypothetical protein [Oryza sativa (japonica cult... 109 9e-24
ref|NP_566405.1| hypothetical protein; protein id: At3g11920.1 [... 93 7e-19
ref|NP_502602.1| Putative cytoplasmic protein of ancient origin ... 54 4e-07
ref|NP_796720.1| conserved hypothetical protein [Vibrio parahaem... 35 0.28
ref|NP_486449.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 33 0.62
>gb|AAM91894.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 704
Score = 109 bits (272), Expect = 9e-24
Identities = 46/66 (69%), Positives = 55/66 (82%)
Frame = -3
Query: 432 EVDLEKRTIHLTPIFKWYSMDFGPEKNIVKWIINYLDANKAGLLTHLLADGGPVNISYQN 253
E+DLE RT+HLT I KWYS+DFG ++ +KWI+NYLD KAGLLTHLL DGG +NISY N
Sbjct: 638 EIDLESRTVHLTSIIKWYSVDFGQDRETLKWILNYLDPTKAGLLTHLLNDGGAINISYLN 697
Query: 252 YDWSIN 235
YDWS+N
Sbjct: 698 YDWSLN 703
>ref|NP_566405.1| hypothetical protein; protein id: At3g11920.1 [Arabidopsis
thaliana] gi|6671948|gb|AAF23208.1|AC016795_21
hypothetical protein [Arabidopsis thaliana]
gi|10998130|dbj|BAB03101.1| gene_id:MEC18.2~unknown
protein [Arabidopsis thaliana]
Length = 630
Score = 93.2 bits (230), Expect = 7e-19
Identities = 43/68 (63%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Frame = -3
Query: 432 EVDLEKRTIHLTPIFKWYSMDFGPEKNIVKWIINYLDANKAGLLTHLLAD-GGPVNISYQ 256
EV L+KRTIHL+ I KWY DF EK ++KWI+ Y+D+N AGLLTHLL D GG NI YQ
Sbjct: 563 EVVLDKRTIHLSRIIKWYKEDFSEEKKMLKWIMGYIDSNDAGLLTHLLGDGGGSFNIVYQ 622
Query: 255 NYDWSINS 232
+YDWS N+
Sbjct: 623 DYDWSTNN 630
>ref|NP_502602.1| Putative cytoplasmic protein of ancient origin [Caenorhabditis
elegans] gi|7509861|pir||T26907 hypothetical protein
Y45F10A.8 - Caenorhabditis elegans
gi|3880985|emb|CAA16364.1| Hypothetical protein
Y45F10A.8 [Caenorhabditis elegans]
Length = 307
Score = 53.9 bits (128), Expect = 4e-07
Identities = 29/68 (42%), Positives = 41/68 (59%), Gaps = 3/68 (4%)
Frame = -3
Query: 429 VDLEKRTIHLTPIFKWYSMDF-GPEKNIVKWIINYLDANKAGLLTHL--LADGGPVNISY 259
VD++K IHL FKW+S DF G + I++WI++ LD N++ +L L G +I Y
Sbjct: 212 VDMKKNVIHLGKTFKWFSDDFGGSTEKILQWILDVLDTNESDKKHNLQKLFFTGEYSIEY 271
Query: 258 QNYDWSIN 235
YDWS N
Sbjct: 272 IPYDWSTN 279
>ref|NP_796720.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633] gi|28805324|dbj|BAC58604.1| conserved
hypothetical protein [Vibrio parahaemolyticus]
Length = 260
Score = 34.7 bits (78), Expect = 0.28
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -3
Query: 429 VDLEKRTIHLTPIFKWYSMDFGPEKNIVKWIINYLDANKAGLLTHLLADGGPVNISYQNY 250
V +E T ++ I++W+++DFG EK + I Y A H + Y +Y
Sbjct: 204 VSIEGDTAKISSIYEWFAVDFGGEKEVFNHIRKY-----APQYNHFSG-----RVKY-DY 252
Query: 249 DWSIN 235
DWS+N
Sbjct: 253 DWSLN 257
>ref|NP_486449.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25529936|pir||AB2107
hypothetical protein all2409 [imported] - Nostoc sp.
(strain PCC 7120) gi|17131501|dbj|BAB74108.1|
ORF_ID:all2409~hypothetical protein [Nostoc sp. PCC
7120]
Length = 233
Score = 33.5 bits (75), Expect = 0.62
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 426 DLEKRTIHLTPIFKWYSMDF-GPEKNIVKWIINYLDANKAGLLTHLLADGGPVNISYQNY 250
D +T++ + IFKWY DF ++ ++I +YL + L P I Y +Y
Sbjct: 173 DFSTQTLYCSKIFKWYRQDFLKAAPSLPEYIGSYLKIDAP------LTASTP--IVYLDY 224
Query: 249 DWSIN 235
DWS+N
Sbjct: 225 DWSLN 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,435,148
Number of Sequences: 1393205
Number of extensions: 6317792
Number of successful extensions: 12832
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12827
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
