Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010305A_C01 KMC010305A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C84462 hypothetical protein At2g04850 [imported] - Arabidop... 195 2e-49
ref|NP_565316.1| expressed protein; protein id: At2g04850.1, sup... 195 2e-49
gb|AAM61181.1| unknown [Arabidopsis thaliana] 195 2e-49
gb|AAN59777.1| Hypothetical protein [Oryza sativa (japonica cult... 172 1e-42
gb|AAN59773.1| Putative membrane protein [Oryza sativa (japonica... 119 2e-26
>pir||C84462 hypothetical protein At2g04850 [imported] - Arabidopsis thaliana
Length = 436
Score = 195 bits (496), Expect = 2e-49
Identities = 90/124 (72%), Positives = 104/124 (83%)
Frame = -1
Query: 493 IGIRLGELSPGVEYRLHRKLGIAVFCLGAMQTLALLFRPNERNRFRKYWKSYHHFVGYSC 314
IGI LG SPGV Y LHR LGIA F A+QTLALLFRP N+FR+YWKSYHHFVGY+C
Sbjct: 304 IGIVLGHNSPGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKSYHHFVGYAC 363
Query: 313 VVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTMIGVCIALEVNSWVVFCRKSKEDKMRRE 134
VV+G VNVFQGFEV+ RSYAKL YCL LST++GVC+A+EVNSWVVFCRK+KE+KM+R+
Sbjct: 364 VVMGVVNVFQGFEVLREGRSYAKLGYCLCLSTLVGVCVAMEVNSWVVFCRKAKEEKMKRD 423
Query: 133 GLIG 122
GL G
Sbjct: 424 GLTG 427
>ref|NP_565316.1| expressed protein; protein id: At2g04850.1, supported by cDNA:
113395. [Arabidopsis thaliana]
gi|20197988|gb|AAD22321.2| expressed protein
[Arabidopsis thaliana]
Length = 404
Score = 195 bits (496), Expect = 2e-49
Identities = 90/124 (72%), Positives = 104/124 (83%)
Frame = -1
Query: 493 IGIRLGELSPGVEYRLHRKLGIAVFCLGAMQTLALLFRPNERNRFRKYWKSYHHFVGYSC 314
IGI LG SPGV Y LHR LGIA F A+QTLALLFRP N+FR+YWKSYHHFVGY+C
Sbjct: 272 IGIVLGHNSPGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKSYHHFVGYAC 331
Query: 313 VVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTMIGVCIALEVNSWVVFCRKSKEDKMRRE 134
VV+G VNVFQGFEV+ RSYAKL YCL LST++GVC+A+EVNSWVVFCRK+KE+KM+R+
Sbjct: 332 VVMGVVNVFQGFEVLREGRSYAKLGYCLCLSTLVGVCVAMEVNSWVVFCRKAKEEKMKRD 391
Query: 133 GLIG 122
GL G
Sbjct: 392 GLTG 395
>gb|AAM61181.1| unknown [Arabidopsis thaliana]
Length = 404
Score = 195 bits (496), Expect = 2e-49
Identities = 90/124 (72%), Positives = 104/124 (83%)
Frame = -1
Query: 493 IGIRLGELSPGVEYRLHRKLGIAVFCLGAMQTLALLFRPNERNRFRKYWKSYHHFVGYSC 314
IGI LG SPGV Y LHR LGIA F A+QTLALLFRP N+FR+YWKSYHHFVGY+C
Sbjct: 272 IGIVLGHNSPGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKSYHHFVGYAC 331
Query: 313 VVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTMIGVCIALEVNSWVVFCRKSKEDKMRRE 134
VV+G VNVFQGFEV+ RSYAKL YCL LST++GVC+A+EVNSWVVFCRK+KE+KM+R+
Sbjct: 332 VVMGVVNVFQGFEVLREGRSYAKLGYCLCLSTLVGVCVAMEVNSWVVFCRKAKEEKMKRD 391
Query: 133 GLIG 122
GL G
Sbjct: 392 GLTG 395
>gb|AAN59777.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 417
Score = 172 bits (437), Expect = 1e-42
Identities = 79/121 (65%), Positives = 96/121 (79%), Gaps = 1/121 (0%)
Frame = -1
Query: 493 IGIRLGELSPGVEYRLHRKLGIAVFCLGAMQTLALLFRPNERNRFRKYWKSYHHFVGYSC 314
+G+ +G SPGV Y+LHR LGIA G++QTLA+LFRP NR+RKYWKSYHH VGY C
Sbjct: 284 LGLVMGSASPGVTYKLHRGLGIAAATAGSLQTLAMLFRPKTTNRYRKYWKSYHHLVGYGC 343
Query: 313 VVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTMIGVCIALEVNSWVVFCRKSKEDK-MRR 137
VV+G VNVFQGFEVMG SY KL YC+ L+T+ G C+ALEVN+WVVFCR+ +E+K MRR
Sbjct: 344 VVVGVVNVFQGFEVMGLGASYWKLGYCMALATLAGGCVALEVNAWVVFCRRQQEEKLMRR 403
Query: 136 E 134
E
Sbjct: 404 E 404
>gb|AAN59773.1| Putative membrane protein [Oryza sativa (japonica cultivar-group)]
Length = 384
Score = 119 bits (297), Expect = 2e-26
Identities = 52/116 (44%), Positives = 78/116 (66%)
Frame = -1
Query: 493 IGIRLGELSPGVEYRLHRKLGIAVFCLGAMQTLALLFRPNERNRFRKYWKSYHHFVGYSC 314
+G++LG S G+ Y HR +GIA+FCL +Q ALL RP+++N++R YW YHH VGYS
Sbjct: 256 LGLKLGSESKGITYSAHRNIGIAIFCLATLQVFALLLRPDKKNKYRFYWNIYHHSVGYSA 315
Query: 313 VVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTMIGVCIALEVNSWVVFCRKSKEDK 146
+VL VN+F+G +++ + + K SY L+T+ GV + LE +WV+ R+ K DK
Sbjct: 316 IVLAAVNIFKGLDILKPASGW-KRSYIAILATLAGVALLLEAITWVIVLRRKKSDK 370
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,151,844
Number of Sequences: 1393205
Number of extensions: 10942958
Number of successful extensions: 34283
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 32715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34250
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
