Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010301A_C01 KMC010301A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO26315.1| putative 6-phosphogluconolactonase [Elaeis guinee... 86 4e-16
ref|NP_172826.1| unknown protein; protein id: At1g13700.1 [Arabi... 83 2e-15
dbj|BAB11233.1| 6-phosphogluconolactonase-like protein [Arabidop... 80 2e-14
ref|NP_568445.1| 6-phosphogluconolactonase-like protein; protein... 80 2e-14
gb|AAM63366.1| 6-phosphogluconolactonase-like protein [Arabidops... 80 2e-14
>gb|AAO26315.1| putative 6-phosphogluconolactonase [Elaeis guineensis]
Length = 270
Score = 85.5 bits (210), Expect = 4e-16
Identities = 45/79 (56%), Positives = 61/79 (76%), Gaps = 3/79 (3%)
Frame = -3
Query: 540 TYLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSAL--EKGPTDYKLPVQLV 367
T+++++PKPPPERITFT PVINS++ +A+VVTG+GKA AV+ AL E+ +D LPV++V
Sbjct: 187 TFIEDSPKPPPERITFTFPVINSSAYVALVVTGSGKAGAVHKALGGEQSSSD-MLPVEMV 245
Query: 366 S-PDGELKWFLDKGAASRL 313
S DG+ WF DK A S L
Sbjct: 246 SLKDGKFIWFTDKAAVSML 264
>ref|NP_172826.1| unknown protein; protein id: At1g13700.1 [Arabidopsis thaliana]
gi|25309663|pir||D86270 F21F23.14 protein - Arabidopsis
thaliana gi|8920575|gb|AAF81297.1|AC027656_14 Contains
similarity to a putative 6-phosphogluconolactonase
T1G12.6 gi|6553917 from Arabidopsis thaliana BAC T1G12
gb|AC012329
Length = 268
Score = 83.2 bits (204), Expect = 2e-15
Identities = 43/82 (52%), Positives = 59/82 (71%), Gaps = 4/82 (4%)
Frame = -3
Query: 540 TYLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALEKGP---TDYKLPVQL 370
T+L ++ KPPPERITFTLPVINSA+N+ +V TG KA+A++ A++ P + LP +L
Sbjct: 182 TFLTDSHKPPPERITFTLPVINSAANVVVVATGESKANAIHLAIDDLPLPDSSLSLPARL 241
Query: 369 VSP-DGELKWFLDKGAASRLYR 307
V P +G L WF+DK A S+L R
Sbjct: 242 VHPSNGNLIWFMDKQAGSKLDR 263
>dbj|BAB11233.1| 6-phosphogluconolactonase-like protein [Arabidopsis thaliana]
Length = 256
Score = 79.7 bits (195), Expect = 2e-14
Identities = 41/74 (55%), Positives = 56/74 (75%)
Frame = -3
Query: 534 LKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALEKGPTDYKLPVQLVSPDG 355
+ ++PKPP ERITFT PVINS++++A+VV G+GKA+AV +AL+K T P VS +
Sbjct: 185 ISDSPKPPSERITFTFPVINSSAHVALVVCGSGKAEAVEAALKK--TGNVPPAGSVSAED 242
Query: 354 ELKWFLDKGAASRL 313
EL WFLDK A+S+L
Sbjct: 243 ELVWFLDKPASSKL 256
>ref|NP_568445.1| 6-phosphogluconolactonase-like protein; protein id: At5g24400.1,
supported by cDNA: 21890. [Arabidopsis thaliana]
gi|25054866|gb|AAN71922.1| putative
6-phosphogluconolactonase [Arabidopsis thaliana]
Length = 325
Score = 79.7 bits (195), Expect = 2e-14
Identities = 41/74 (55%), Positives = 56/74 (75%)
Frame = -3
Query: 534 LKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALEKGPTDYKLPVQLVSPDG 355
+ ++PKPP ERITFT PVINS++++A+VV G+GKA+AV +AL+K T P VS +
Sbjct: 254 ISDSPKPPSERITFTFPVINSSAHVALVVCGSGKAEAVEAALKK--TGNVPPAGSVSAED 311
Query: 354 ELKWFLDKGAASRL 313
EL WFLDK A+S+L
Sbjct: 312 ELVWFLDKPASSKL 325
>gb|AAM63366.1| 6-phosphogluconolactonase-like protein [Arabidopsis thaliana]
Length = 325
Score = 79.7 bits (195), Expect = 2e-14
Identities = 41/74 (55%), Positives = 56/74 (75%)
Frame = -3
Query: 534 LKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALEKGPTDYKLPVQLVSPDG 355
+ ++PKPP ERITFT PVINS++++A+VV G+GKA+AV +AL+K T P VS +
Sbjct: 254 ISDSPKPPSERITFTFPVINSSAHVALVVCGSGKAEAVEAALKK--TGNVPPAGSVSAED 311
Query: 354 ELKWFLDKGAASRL 313
EL WFLDK A+S+L
Sbjct: 312 ELVWFLDKPASSKL 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,408,368
Number of Sequences: 1393205
Number of extensions: 9180914
Number of successful extensions: 23017
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 22309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22986
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
