Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010298A_C01 KMC010298A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568857.1| putative protein; protein id: At5g57410.1, supp... 84 7e-16
gb|AAO00808.1| Unknown protein [Arabidopsis thaliana] 78 6e-14
dbj|BAC43664.1| unknown protein [Arabidopsis thaliana] gi|289509... 78 6e-14
ref|NP_717141.1| heat shock protein GrpE [Shewanella oneidensis ... 35 0.61
ref|NP_665789.1| SrpF [Synechococcus sp. PCC 7942] gi|5823446|gb... 31 8.8
>ref|NP_568857.1| putative protein; protein id: At5g57410.1, supported by cDNA:
37326. [Arabidopsis thaliana]
Length = 373
Score = 84.3 bits (207), Expect = 7e-16
Identities = 46/59 (77%), Positives = 49/59 (82%)
Frame = -2
Query: 497 DAQKGAEVTSEATERELELEAQLVEARSIIQEQASIMSKHLAKSDRPRESIIPAAAEAV 321
DA K A VTSEATERELELEAQLVEARSIIQEQ SIMSKHL KS++ RES+ AAE V
Sbjct: 315 DAPKRASVTSEATERELELEAQLVEARSIIQEQESIMSKHLPKSEQRRESVASLAAEGV 373
>gb|AAO00808.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 77.8 bits (190), Expect = 6e-14
Identities = 41/53 (77%), Positives = 44/53 (82%)
Frame = -2
Query: 497 DAQKGAEVTSEATERELELEAQLVEARSIIQEQASIMSKHLAKSDRPRESIIP 339
DAQK +TSEA+ERELELEAQLVEARSIIQEQ SIMSKHL K+DR R S P
Sbjct: 223 DAQKEVSITSEASERELELEAQLVEARSIIQEQESIMSKHLPKTDRRRNSAPP 275
>dbj|BAC43664.1| unknown protein [Arabidopsis thaliana] gi|28950955|gb|AAO63401.1|
At2g18870 [Arabidopsis thaliana]
Length = 382
Score = 77.8 bits (190), Expect = 6e-14
Identities = 41/53 (77%), Positives = 44/53 (82%)
Frame = -2
Query: 497 DAQKGAEVTSEATERELELEAQLVEARSIIQEQASIMSKHLAKSDRPRESIIP 339
DAQK +TSEA+ERELELEAQLVEARSIIQEQ SIMSKHL K+DR R S P
Sbjct: 321 DAQKEVSITSEASERELELEAQLVEARSIIQEQESIMSKHLPKTDRRRNSAPP 373
>ref|NP_717141.1| heat shock protein GrpE [Shewanella oneidensis MR-1]
gi|24347284|gb|AAN54585.1|AE015598_4 heat shock protein
GrpE [Shewanella oneidensis MR-1]
Length = 206
Score = 34.7 bits (78), Expect = 0.61
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -2
Query: 476 VTSEATERELELEAQLVEARSIIQEQASIMSKHLAKSDRPRESIIPAAAE 327
V SE + E L +L +A I+E +++ LAK D ++S+I AAAE
Sbjct: 17 VESEVSTEEASLIDELTQANFRIEELEQLLADALAKVDEQKDSVIRAAAE 66
>ref|NP_665789.1| SrpF [Synechococcus sp. PCC 7942]
gi|5823446|gb|AAD53160.1|AF176824_3 alpha-helical
coiled-coil protein SrpF [Synechococcus sp. PCC 7942]
gi|21913226|gb|AAM81176.1|AF441790_47 SrpF
[Synechococcus sp. PCC 7942]
Length = 175
Score = 30.8 bits (68), Expect = 8.8
Identities = 21/53 (39%), Positives = 31/53 (57%)
Frame = -2
Query: 479 EVTSEATERELELEAQLVEARSIIQEQASIMSKHLAKSDRPRESIIPAAAEAV 321
E+ +E + EL QL EA S Q+QA ++ +A SDR I+ AA+E+V
Sbjct: 12 EIAAETVKAEL---TQLAEAAS--QQQAVLIEAQVAPSDRKIFVIVEAASESV 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,957,743
Number of Sequences: 1393205
Number of extensions: 7660243
Number of successful extensions: 15637
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15598
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
