Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010297A_C01 KMC010297A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_572172.1| CG3546-PA [Drosophila melanogaster] gi|7290505|... 42 0.004
ref|NP_065612.1| splicing factor, arginine/serine-rich 4 (SRp75)... 40 0.018
dbj|BAC36925.1| unnamed protein product [Mus musculus] 40 0.018
gb|AAO52526.1| similar to Xenopus laevis (African clawed frog). ... 40 0.024
gb|EAA10955.1| agCP6589 [Anopheles gambiae str. PEST] 39 0.031
>ref|NP_572172.1| CG3546-PA [Drosophila melanogaster] gi|7290505|gb|AAF45958.1|
CG3546-PA [Drosophila melanogaster]
Length = 630
Score = 42.4 bits (98), Expect = 0.004
Identities = 37/165 (22%), Positives = 77/165 (46%)
Frame = +2
Query: 47 EQPSQGRENER*SLQQENRIKDNQKKKTRD*RLTSNRAKEKKTK*KKNRDEAKTKTATAH 226
++P+Q +N++ Q++ + NQ++K + R ++KK K + DE K
Sbjct: 308 KRPNQKNKNKKNQKQKQKQKNKNQQQKNK-------RQQQKKRKQQAQDDEQPAKQKKKP 360
Query: 227 VRRGLGQHPKDQKLRRKRGQEQPGDSH*KQTFTPGKILTHAASKGQSKVYKAAAKITRDT 406
++ Q K K ++K+ E+ + + TP +++ + QS V A+ T +
Sbjct: 361 QQQDKDQKKKQDKDQKKKKPEENPNQQEMEQLTPVEVIKKPVAMEQSAV---ASSATSSS 417
Query: 407 NPMATTSSPSIVQKNIAIQNSTYQIASQEHISDNINSTSAARETK 541
N A++SS S N + + + ++ S + +S+ + R TK
Sbjct: 418 NVAASSSSVSSSGSNSSDKKKNKK--KKKKPSSSSSSSLSQRRTK 460
>ref|NP_065612.1| splicing factor, arginine/serine-rich 4 (SRp75); similar to
splicing factor, arginine/serine-rich 4 (SFRS4) [Mus
musculus] gi|7670438|dbj|BAA95070.1| unnamed protein
product [Mus musculus]
Length = 339
Score = 40.0 bits (92), Expect = 0.018
Identities = 36/166 (21%), Positives = 75/166 (44%), Gaps = 3/166 (1%)
Frame = +2
Query: 44 REQPSQGRENER*SLQQENRIKDNQKKKTRD*RLTSNRAKEKKTK*KKNRDEAKTKTATA 223
R S+ R E+ Q+++ +K + +++ + +R+K+K+ K++RDE+++++ +
Sbjct: 161 RRSVSRARSQEKSRSQEKSLLKSRSRSRSKVGSRSRSRSKDKRKGRKRSRDESRSRSRSK 220
Query: 224 HVRRGLGQHPKDQKLRRKRGQEQPGDSH*KQ-TFTPGKILTHA-ASKGQSKVYKAAAKIT 397
R +D K+ +++ H + + + K HA A GQ +
Sbjct: 221 SERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPSRSVSKEREHAKAESGQRESRAEGESEA 280
Query: 398 RDTNPMATTSSPSIVQKNI-AIQNSTYQIASQEHISDNINSTSAAR 532
+ P A + S S + N+ A S + AS+ S SA+R
Sbjct: 281 PNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASR 326
>dbj|BAC36925.1| unnamed protein product [Mus musculus]
Length = 491
Score = 40.0 bits (92), Expect = 0.018
Identities = 36/166 (21%), Positives = 75/166 (44%), Gaps = 3/166 (1%)
Frame = +2
Query: 44 REQPSQGRENER*SLQQENRIKDNQKKKTRD*RLTSNRAKEKKTK*KKNRDEAKTKTATA 223
R S+ R E+ Q+++ +K + +++ + +R+K+K+ K++RDE+++++ +
Sbjct: 313 RRSVSRARSQEKSRSQEKSLLKSRSRSRSKVGSRSRSRSKDKRKGRKRSRDESRSRSRSK 372
Query: 224 HVRRGLGQHPKDQKLRRKRGQEQPGDSH*KQ-TFTPGKILTHA-ASKGQSKVYKAAAKIT 397
R +D K+ +++ H + + + K HA A GQ +
Sbjct: 373 SERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPSRSVSKEREHAKAESGQRESRAEGESEA 432
Query: 398 RDTNPMATTSSPSIVQKNI-AIQNSTYQIASQEHISDNINSTSAAR 532
+ P A + S S + N+ A S + AS+ S SA+R
Sbjct: 433 PNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASR 478
>gb|AAO52526.1| similar to Xenopus laevis (African clawed frog). DNA ligase I (EC
6.5.1.1) (Polydeoxyribonucleotide synthase [ATP])
[Dictyostelium discoideum]
Length = 1192
Score = 39.7 bits (91), Expect = 0.024
Identities = 37/180 (20%), Positives = 82/180 (45%), Gaps = 10/180 (5%)
Frame = +2
Query: 32 KKHPREQPSQGRENER*SLQQENRIKDNQKKKTRD*RLTSNRAKEKKTK*KKNRDEAKTK 211
+K +E+ + ++ E+ +E +K+ +KK+ + KEK+ K K+ +++ + +
Sbjct: 273 EKELKEKEKELKDKEK----KEKELKEKEKKEKEEKEKEKKEKKEKELKEKEEKEKKEKE 328
Query: 212 TATAHVRRGLGQHPKDQKLRRKRGQEQPGDSH*KQTFTPGKILTHAASKGQSKVYKAAAK 391
+ K+++L+ K +E+ S K+T + A ++ +S V + +K
Sbjct: 329 LKEKEL--------KEKELKEKELKEKELTSPKKETIDISDLFKRANAEAKSSVPTSTSK 380
Query: 392 ITR-------DTNPMATTSSPSIV---QKNIAIQNSTYQIASQEHISDNINSTSAARETK 541
++ D P ATT PS V +++ +T ++ IS S+ + +E K
Sbjct: 381 NSKTNKKQKVDHKPTATTKKPSPVLEAKQSTTTTTTTTTTSTATTISSKSISSPSKKEEK 440
>gb|EAA10955.1| agCP6589 [Anopheles gambiae str. PEST]
Length = 373
Score = 39.3 bits (90), Expect = 0.031
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 3/144 (2%)
Frame = +2
Query: 32 KKHPREQPSQGRENER*SLQQENRIKDNQKKKTRD---*RLTSNRAKEKKTK*KKNRDEA 202
+KH RE+ RE E ++E R ++K+ RD RL + KEK+ K K+ +DE
Sbjct: 183 EKHLREEERHQREEEERRRKEEERKHREEEKRARDDEKRRLEEEKRKEKEEK-KRLKDEK 241
Query: 203 KTKTATAHVRRGLGQHPKDQKLRRKRGQEQPGDSH*KQTFTPGKILTHAASKGQSKVYKA 382
K A+ G +D G +P D+ T + GQ +
Sbjct: 242 KKMAASGKGAGAAGMVAEDDHEYEPIG--EPVDTSKPSTTKDALLAVSGQPDGQERKQSN 299
Query: 383 AAKITRDTNPMATTSSPSIVQKNI 454
A+ + N T S +QK+I
Sbjct: 300 ASFLRVPGNDEGDTISMEELQKSI 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,069,464
Number of Sequences: 1393205
Number of extensions: 10517821
Number of successful extensions: 45992
Number of sequences better than 10.0: 231
Number of HSP's better than 10.0 without gapping: 38588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44204
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
