Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010296A_C01 KMC010296A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01855 probable chaperonin-containing TCP-1 complex gamma c... 189 2e-47
ref|NP_198008.1| chaperonin gamma chain - like protein; protein ... 189 2e-47
sp|O00782|TCPG_OXYGR T-complex protein 1, gamma subunit (TCP-1-g... 100 1e-20
gb|EAA07808.1| agCP1793 [Anopheles gambiae str. PEST] 95 8e-19
sp|P54408|TCPG_TETPY T-COMPLEX PROTEIN 1, GAMMA SUBUNIT (TCP-1-G... 94 1e-18
>pir||T01855 probable chaperonin-containing TCP-1 complex gamma chain F9D12.18 -
Arabidopsis thaliana gi|3319355|gb|AAC26244.1| similar
to chaperonin containing TCP-1 complex gamma chain
[Arabidopsis thaliana]
Length = 562
Score = 189 bits (481), Expect = 2e-47
Identities = 91/101 (90%), Positives = 94/101 (92%)
Frame = -2
Query: 623 CGVNVIXTMTALQGTHANGENAWIGIDGNTGAIADMKERKIWDAYNVKAQTFKTAIEAAC 444
CGVNVI TMTALQG HANGENAW GIDGNTGAIADMKE KIWD+YNVKAQTFKTAIEAAC
Sbjct: 462 CGVNVIRTMTALQGKHANGENAWTGIDGNTGAIADMKESKIWDSYNVKAQTFKTAIEAAC 521
Query: 443 MLLRIDDIVSGIKKKQAPGAGPSKPKVETEADADGEQILPD 321
MLLRIDDIVSGIKKKQAPG+GPSKP +ETE DAD EQILPD
Sbjct: 522 MLLRIDDIVSGIKKKQAPGSGPSKPTIETEGDADNEQILPD 562
>ref|NP_198008.1| chaperonin gamma chain - like protein; protein id: At5g26360.1
[Arabidopsis thaliana] gi|27754225|gb|AAO22566.1|
putative chaperonin gamma chain [Arabidopsis thaliana]
Length = 555
Score = 189 bits (481), Expect = 2e-47
Identities = 91/101 (90%), Positives = 94/101 (92%)
Frame = -2
Query: 623 CGVNVIXTMTALQGTHANGENAWIGIDGNTGAIADMKERKIWDAYNVKAQTFKTAIEAAC 444
CGVNVI TMTALQG HANGENAW GIDGNTGAIADMKE KIWD+YNVKAQTFKTAIEAAC
Sbjct: 455 CGVNVIRTMTALQGKHANGENAWTGIDGNTGAIADMKESKIWDSYNVKAQTFKTAIEAAC 514
Query: 443 MLLRIDDIVSGIKKKQAPGAGPSKPKVETEADADGEQILPD 321
MLLRIDDIVSGIKKKQAPG+GPSKP +ETE DAD EQILPD
Sbjct: 515 MLLRIDDIVSGIKKKQAPGSGPSKPTIETEGDADNEQILPD 555
>sp|O00782|TCPG_OXYGR T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma)
(Chaperonin subunit CCTV gamma)
gi|1906364|emb|CAA72704.1| chaperonin subunit CCTV gamma
[Oxytricha granulifera]
Length = 559
Score = 100 bits (250), Expect = 1e-20
Identities = 50/82 (60%), Positives = 59/82 (70%), Gaps = 1/82 (1%)
Frame = -2
Query: 623 CGVNVIXTMTALQGTHANG-ENAWIGIDGNTGAIADMKERKIWDAYNVKAQTFKTAIEAA 447
CG +V+ MT L+ HAN E + GIDGNTG I DM+E +WD +VK QT KT+IEA
Sbjct: 457 CGADVVRVMTELRAKHANDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEAT 516
Query: 446 CMLLRIDDIVSGIKKKQAPGAG 381
CMLLRIDDIVSGIKK + GAG
Sbjct: 517 CMLLRIDDIVSGIKKDKRGGAG 538
>gb|EAA07808.1| agCP1793 [Anopheles gambiae str. PEST]
Length = 557
Score = 94.7 bits (234), Expect = 8e-19
Identities = 48/88 (54%), Positives = 60/88 (67%), Gaps = 5/88 (5%)
Frame = -2
Query: 623 CGVNVIXTMTALQGTHAN-----GENAWIGIDGNTGAIADMKERKIWDAYNVKAQTFKTA 459
CG N I T+TAL+ HA+ G W GIDG TG + DMKE+ IW+ +VK Q +KTA
Sbjct: 461 CGANTIRTLTALRAKHASHPAADGPCTW-GIDGETGQLVDMKEKNIWEPLSVKLQVYKTA 519
Query: 458 IEAACMLLRIDDIVSGIKKKQAPGAGPS 375
+E A +LLRIDDIVSG KK+ G+GPS
Sbjct: 520 VETAILLLRIDDIVSGSKKRGDDGSGPS 547
>sp|P54408|TCPG_TETPY T-COMPLEX PROTEIN 1, GAMMA SUBUNIT (TCP-1-GAMMA) (CCT-GAMMA)
gi|1078806|pir||A55423 TpCCT-gamma protein - Tetrahymena
pyriformis gi|2654380|emb|CAA84368.1| TCP1gamma protein
[Tetrahymena pyriformis]
Length = 559
Score = 94.0 bits (232), Expect = 1e-18
Identities = 46/98 (46%), Positives = 64/98 (64%)
Frame = -2
Query: 623 CGVNVIXTMTALQGTHANGENAWIGIDGNTGAIADMKERKIWDAYNVKAQTFKTAIEAAC 444
CGV+V+ +T L+ H N +IGI+GN+G I DM E +W+ VK Q +KTAIE+AC
Sbjct: 458 CGVDVVRNITELRAKHNQEGNKFIGIEGNSGKITDMGEANVWEPIAVKLQVYKTAIESAC 517
Query: 443 MLLRIDDIVSGIKKKQAPGAGPSKPKVETEADADGEQI 330
MLLRIDD+VSG+KK++ G S D +G++I
Sbjct: 518 MLLRIDDVVSGLKKQKVAKGGAS------VTDGNGQEI 549
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,223,406
Number of Sequences: 1393205
Number of extensions: 11354454
Number of successful extensions: 28111
Number of sequences better than 10.0: 314
Number of HSP's better than 10.0 without gapping: 27063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28052
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
