Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010280A_C01 KMC010280A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195290.1| NAD+ dependent isocitrate dehydrogenase -like p... 179 2e-44
gb|AAM61498.1| NAD+ dependent isocitrate dehydrogenase subunit 1... 176 1e-43
ref|NP_195252.1| NAD+ dependent isocitrate dehydrogenase subunit... 176 2e-43
gb|AAO61647.1| NAD-dependent isocitrate dehydrogenase beta subun... 174 7e-43
gb|AAO61645.1| NAD-dependent isocitrate dehydrogenase beta subun... 174 9e-43
>ref|NP_195290.1| NAD+ dependent isocitrate dehydrogenase -like protein; protein id:
At4g35650.1 [Arabidopsis thaliana]
gi|7431336|pir||T04670 isocitrate dehydrogenase (NAD+)
homolog F8D20.160 - Arabidopsis thaliana
gi|3367583|emb|CAA20035.1| NAD+ dependent isocitrate
dehydrogenase -like protein [Arabidopsis thaliana]
gi|7270516|emb|CAB80281.1| NAD+ dependent isocitrate
dehydrogenase-like protein [Arabidopsis thaliana]
gi|28393070|gb|AAO41969.1| putative NAD+ dependent
isocitrate dehydrogenase [Arabidopsis thaliana]
Length = 368
Score = 179 bits (455), Expect = 2e-44
Identities = 90/105 (85%), Positives = 98/105 (92%)
Frame = -1
Query: 572 TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNQSLVEQKKANPVALLLSSAMMLRHL 393
TAAGIAGGTGVMPGGNVGA+HA+FEQGASAGNVGN +VEQKKANPVALLLSSAMMLRHL
Sbjct: 264 TAAGIAGGTGVMPGGNVGAEHAIFEQGASAGNVGNDKMVEQKKANPVALLLSSAMMLRHL 323
Query: 392 QFPAFADRLESAVEQVILEGKHRTKDLGGTSTTQEVVDAVIHALD 258
+FP FADRLE+AV+QVI EGK+RTKDLGG TTQEVVDAVI AL+
Sbjct: 324 RFPTFADRLETAVKQVIKEGKYRTKDLGGDCTTQEVVDAVIAALE 368
>gb|AAM61498.1| NAD+ dependent isocitrate dehydrogenase subunit 1 [Arabidopsis
thaliana]
Length = 367
Score = 176 bits (447), Expect = 1e-43
Identities = 90/105 (85%), Positives = 96/105 (90%)
Frame = -1
Query: 572 TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNQSLVEQKKANPVALLLSSAMMLRHL 393
TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVG +V + KANPVALLLSSAMMLRHL
Sbjct: 263 TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDKIVLENKANPVALLLSSAMMLRHL 322
Query: 392 QFPAFADRLESAVEQVILEGKHRTKDLGGTSTTQEVVDAVIHALD 258
QFP+FADRLE+AV++VI EGK RTKDLGGTSTTQEVVDAVI LD
Sbjct: 323 QFPSFADRLETAVKKVIAEGKFRTKDLGGTSTTQEVVDAVIAKLD 367
>ref|NP_195252.1| NAD+ dependent isocitrate dehydrogenase subunit 1; protein id:
At4g35260.1, supported by cDNA: 12228., supported by
cDNA: gi_15146237, supported by cDNA: gi_16226886,
supported by cDNA: gi_1766045 [Arabidopsis thaliana]
gi|7431337|pir||T06131 isocitrate dehydrogenase (NAD)
(EC 1.1.1.41) chain 1 - Arabidopsis thaliana
gi|3080424|emb|CAA18743.1| NAD+ dependent isocitrate
dehydrogenase subunit 1 [Arabidopsis thaliana]
gi|7270478|emb|CAB80243.1| NAD+ dependent isocitrate
dehydrogenase subunit 1 [Arabidopsis thaliana]
gi|15146238|gb|AAK83602.1| AT4g35260/F23E12_180
[Arabidopsis thaliana]
gi|16226887|gb|AAL16290.1|AF428360_1
AT4g35260/F23E12_180 [Arabidopsis thaliana]
gi|22136588|gb|AAM91080.1| AT4g35260/F23E12_180
[Arabidopsis thaliana]
Length = 367
Score = 176 bits (445), Expect = 2e-43
Identities = 90/105 (85%), Positives = 96/105 (90%)
Frame = -1
Query: 572 TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNQSLVEQKKANPVALLLSSAMMLRHL 393
TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVG +V + KANPVALLLSSAMMLRHL
Sbjct: 263 TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDKIVLENKANPVALLLSSAMMLRHL 322
Query: 392 QFPAFADRLESAVEQVILEGKHRTKDLGGTSTTQEVVDAVIHALD 258
QFP+FADRLE+AV++VI EGK RTKDLGGTSTTQEVVDAVI LD
Sbjct: 323 QFPSFADRLETAVKKVIAEGKCRTKDLGGTSTTQEVVDAVIAKLD 367
>gb|AAO61647.1| NAD-dependent isocitrate dehydrogenase beta subunit [Brassica
napus]
Length = 367
Score = 174 bits (441), Expect = 7e-43
Identities = 89/105 (84%), Positives = 96/105 (90%)
Frame = -1
Query: 572 TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNQSLVEQKKANPVALLLSSAMMLRHL 393
TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVG S+V + KANPVALLLSSAMMLRHL
Sbjct: 263 TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDSIVRENKANPVALLLSSAMMLRHL 322
Query: 392 QFPAFADRLESAVEQVILEGKHRTKDLGGTSTTQEVVDAVIHALD 258
QFP+FADRLE+AV++VI EGK RTKDLGG STTQEVVDAVI L+
Sbjct: 323 QFPSFADRLETAVKKVISEGKCRTKDLGGQSTTQEVVDAVIAKLE 367
>gb|AAO61645.1| NAD-dependent isocitrate dehydrogenase beta subunit [Brassica
napus] gi|28974500|gb|AAO61646.1| NAD-dependent
isocitrate dehydrogenase beta subunit [Brassica napus]
Length = 367
Score = 174 bits (440), Expect = 9e-43
Identities = 89/105 (84%), Positives = 96/105 (90%)
Frame = -1
Query: 572 TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNQSLVEQKKANPVALLLSSAMMLRHL 393
TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVG S+V + KANPVALLLSSAMMLRHL
Sbjct: 263 TAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDSIVRKNKANPVALLLSSAMMLRHL 322
Query: 392 QFPAFADRLESAVEQVILEGKHRTKDLGGTSTTQEVVDAVIHALD 258
QFP+FADRLE+AV++VI EGK RTKDLGG STTQEVVDAVI L+
Sbjct: 323 QFPSFADRLETAVKKVISEGKCRTKDLGGQSTTQEVVDAVIAKLE 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,759,325
Number of Sequences: 1393205
Number of extensions: 10549416
Number of successful extensions: 32532
Number of sequences better than 10.0: 447
Number of HSP's better than 10.0 without gapping: 29226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32029
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
