Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010263A_C01 KMC010263A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89512.1| P0414E03.8 [Oryza sativa (japonica cultivar-group)] 48 1e-04
gb|AAM60845.1| unknown [Arabidopsis thaliana] 44 0.002
ref|NP_566992.1| expressed protein; protein id: At3g54000.1, sup... 44 0.002
ref|NP_492104.2| Bromodomain HMG box Zinc finger C2H2 type [Caen... 39 0.044
pir||T19481 hypothetical protein C26C6.1 - Caenorhabditis elegans 39 0.044
>dbj|BAB89512.1| P0414E03.8 [Oryza sativa (japonica cultivar-group)]
Length = 471
Score = 47.8 bits (112), Expect = 1e-04
Identities = 21/29 (72%), Positives = 25/29 (85%)
Frame = -2
Query: 631 APSESRKKPGCSTVLVPDRVAQALNLNLD 545
AP+E +KKP CSTVL+P RV QALNLN+D
Sbjct: 274 APAEPKKKPSCSTVLLPARVVQALNLNVD 302
>gb|AAM60845.1| unknown [Arabidopsis thaliana]
Length = 352
Score = 43.9 bits (102), Expect = 0.002
Identities = 34/92 (36%), Positives = 45/92 (47%), Gaps = 1/92 (1%)
Frame = -2
Query: 625 SESRKKPGCSTVLVPDRVAQALNLNLDGGMVGRQRPHQHHHHVNGVSNIENVSSVVPRVR 446
+E+R+KP STVLVP R+AQ LNLNL V + ++ V R R
Sbjct: 278 TETREKPTISTVLVPARLAQVLNLNLG----------------EPVRSTATLNDVSWRQR 321
Query: 445 SSSYGVSQQK-RNLRPQPPVNHEIHLPKEWTY 353
S++ G S Q +R + V E LP EW Y
Sbjct: 322 SNNGGFSSQMVGGVRAEQSV-QEPRLPSEWAY 352
>ref|NP_566992.1| expressed protein; protein id: At3g54000.1, supported by cDNA:
101230. [Arabidopsis thaliana]
gi|28393011|gb|AAO41940.1| unknown protein [Arabidopsis
thaliana] gi|28827608|gb|AAO50648.1| unknown protein
[Arabidopsis thaliana]
Length = 352
Score = 43.9 bits (102), Expect = 0.002
Identities = 34/92 (36%), Positives = 45/92 (47%), Gaps = 1/92 (1%)
Frame = -2
Query: 625 SESRKKPGCSTVLVPDRVAQALNLNLDGGMVGRQRPHQHHHHVNGVSNIENVSSVVPRVR 446
+E+R+KP STVLVP R+AQ LNLNL V + ++ V R R
Sbjct: 278 TETREKPTISTVLVPARLAQVLNLNLG----------------EPVRSTATLNDVSWRQR 321
Query: 445 SSSYGVSQQK-RNLRPQPPVNHEIHLPKEWTY 353
S++ G S Q +R + V E LP EW Y
Sbjct: 322 SNNGGFSSQMVGGVRAEQSV-QEPRLPSEWAY 352
>ref|NP_492104.2| Bromodomain HMG box Zinc finger C2H2 type [Caenorhabditis elegans]
gi|18958139|emb|CAA96600.2| Hypothetical protein C26C6.1
[Caenorhabditis elegans] gi|19171244|emb|CAA96697.2|
Hypothetical protein C26C6.1 [Caenorhabditis elegans]
Length = 1883
Score = 39.3 bits (90), Expect = 0.044
Identities = 27/85 (31%), Positives = 39/85 (45%)
Frame = -2
Query: 607 PGCSTVLVPDRVAQALNLNLDGGMVGRQRPHQHHHHVNGVSNIENVSSVVPRVRSSSYGV 428
PGC V P Q +GG+ +Q+ Q HH NG++ N+ P+V + + V
Sbjct: 1627 PGCRIVSAP--YGQLPTAPSNGGIPPQQQHQQQQHHGNGMNG--NMQQGAPQV-INRHPV 1681
Query: 427 SQQKRNLRPQPPVNHEIHLPKEWTY 353
SQQ + PQ H H P + Y
Sbjct: 1682 SQQMHHQHPQHMQQHHDHHPHQQHY 1706
>pir||T19481 hypothetical protein C26C6.1 - Caenorhabditis elegans
Length = 1879
Score = 39.3 bits (90), Expect = 0.044
Identities = 27/85 (31%), Positives = 39/85 (45%)
Frame = -2
Query: 607 PGCSTVLVPDRVAQALNLNLDGGMVGRQRPHQHHHHVNGVSNIENVSSVVPRVRSSSYGV 428
PGC V P Q +GG+ +Q+ Q HH NG++ N+ P+V + + V
Sbjct: 1623 PGCRIVSAP--YGQLPTAPSNGGIPPQQQHQQQQHHGNGMNG--NMQQGAPQV-INRHPV 1677
Query: 427 SQQKRNLRPQPPVNHEIHLPKEWTY 353
SQQ + PQ H H P + Y
Sbjct: 1678 SQQMHHQHPQHMQQHHDHHPHQQHY 1702
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,365,553
Number of Sequences: 1393205
Number of extensions: 13895380
Number of successful extensions: 46166
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 41900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45606
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
