Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010262A_C01 KMC010262A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB85329.1| OJ1656_A11.18 [Oryza sativa (japonica cultivar-g... 60 1e-08
ref|NP_180353.1| putative dTDP-glucose 4-6-dehydratase; protein ... 55 3e-07
gb|AAM65998.1| putative dTDP-glucose 4-6-dehydratase [Arabidopsi... 55 3e-07
ref|NP_563807.1| expressed protein; protein id: At1g08200.1, sup... 55 3e-07
gb|AAK68820.1| similar to dihydroflavonol reductase [Arabidopsis... 50 1e-05
>dbj|BAB85329.1| OJ1656_A11.18 [Oryza sativa (japonica cultivar-group)]
Length = 398
Score = 60.1 bits (144), Expect = 1e-08
Identities = 25/41 (60%), Positives = 33/41 (79%)
Frame = -2
Query: 475 LITKQLGWKPKTPLDELLQVTLKYQHETYSHAIKKELSKPS 353
+I KQLGW PKTPL +LL+ TL YQH+TY AIK+++S+ S
Sbjct: 355 IINKQLGWNPKTPLKDLLETTLTYQHKTYKEAIKRQMSQAS 395
>ref|NP_180353.1| putative dTDP-glucose 4-6-dehydratase; protein id: At2g27860.1,
supported by cDNA: 28205., supported by cDNA:
gi_13605496 [Arabidopsis thaliana]
gi|25407929|pir||G84677 probable dTDP-glucose
4-6-dehydratase [imported] - Arabidopsis thaliana
gi|3860247|gb|AAC73015.1| putative dTDP-glucose
4-6-dehydratase [Arabidopsis thaliana]
gi|13605497|gb|AAK32742.1|AF361574_1 At2g27860/F15K20.4
[Arabidopsis thaliana] gi|21555529|gb|AAM63878.1|
putative dTDP-glucose 4-6-dehydratase [Arabidopsis
thaliana] gi|24111293|gb|AAN46770.1| At2g27860/F15K20.4
[Arabidopsis thaliana]
Length = 389
Score = 55.5 bits (132), Expect = 3e-07
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = -2
Query: 475 LITKQLGWKPKTPLDELLQVTLKYQHETYSHAIKKELSKP 356
+I +QLGW PKT L +LL+ TL YQH TY+ A+KK SKP
Sbjct: 347 IINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKKATSKP 386
>gb|AAM65998.1| putative dTDP-glucose 4-6-dehydratase [Arabidopsis thaliana]
Length = 389
Score = 55.5 bits (132), Expect = 3e-07
Identities = 25/40 (62%), Positives = 30/40 (74%)
Frame = -2
Query: 475 LITKQLGWKPKTPLDELLQVTLKYQHETYSHAIKKELSKP 356
+I +QLGW PKT L +LL+ TL YQH TY+ AIKK SKP
Sbjct: 347 IINRQLGWNPKTSLWDLLESTLTYQHTTYAEAIKKATSKP 386
>ref|NP_563807.1| expressed protein; protein id: At1g08200.1, supported by cDNA:
6892., supported by cDNA: gi_14596184 [Arabidopsis
thaliana] gi|25407031|pir||C86216 protein T23G18.6
[imported] - Arabidopsis thaliana
gi|6579211|gb|AAF18254.1|AC011438_16 T23G18.6
[Arabidopsis thaliana] gi|24899785|gb|AAN65107.1|
similar to dihydroflavonol reductase [Arabidopsis
thaliana]
Length = 389
Score = 55.5 bits (132), Expect = 3e-07
Identities = 25/40 (62%), Positives = 30/40 (74%)
Frame = -2
Query: 475 LITKQLGWKPKTPLDELLQVTLKYQHETYSHAIKKELSKP 356
+I +QLGW PKT L +LL+ TL YQH TY+ AIKK SKP
Sbjct: 347 IINRQLGWNPKTSLWDLLESTLTYQHTTYAEAIKKATSKP 386
>gb|AAK68820.1| similar to dihydroflavonol reductase [Arabidopsis thaliana]
Length = 389
Score = 50.1 bits (118), Expect = 1e-05
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = -2
Query: 475 LITKQLGWKPKTPLDELLQVTLKYQHETYSHAIKKELSKP 356
+I +QLG PKT L +LL+ TL YQH TY+ AIKK SKP
Sbjct: 347 IINRQLGCTPKTSLWDLLESTLTYQHTTYAEAIKKATSKP 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,627,297
Number of Sequences: 1393205
Number of extensions: 6578460
Number of successful extensions: 16549
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16549
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
