Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010258A_C01 KMC010258A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199595.1| putative protein; protein id: At5g47840.1, supp... 49 3e-05
ref|NP_717013.1| transcriptional regulator, TetR family [Shewane... 31 9.6
>ref|NP_199595.1| putative protein; protein id: At5g47840.1, supported by cDNA:
gi_15146327 [Arabidopsis thaliana]
gi|10177920|dbj|BAB11331.1| contains similarity to
adenylate kinase~gene_id:MCA23.18 [Arabidopsis thaliana]
gi|15146328|gb|AAK83647.1| AT5g47840/MCA23_18
[Arabidopsis thaliana] gi|24111333|gb|AAN46790.1|
At5g47840/MCA23_18 [Arabidopsis thaliana]
Length = 283
Score = 48.9 bits (115), Expect = 3e-05
Identities = 22/37 (59%), Positives = 29/37 (77%)
Frame = -3
Query: 510 DITVKIDGNASKEEVFVQIDGALTRLLEQRKAASGSV 400
DIT+KI+GN SKEEVF QID +L+ LL++R A S+
Sbjct: 245 DITIKIEGNRSKEEVFAQIDSSLSELLQERNTAPSSL 281
>ref|NP_717013.1| transcriptional regulator, TetR family [Shewanella oneidensis MR-1]
gi|24347121|gb|AAN54458.1|AE015583_3 transcriptional
regulator, TetR family [Shewanella oneidensis MR-1]
Length = 205
Score = 30.8 bits (68), Expect = 9.6
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 46 TQTGTGTGTDKRGFTKSDIYKLHKNYYFKVI----IFSSK*TSNITQRTLL*QVPARSKL 213
T++ GT +DKR + +KL +YF+ + I S I ++TL ++ +L
Sbjct: 5 TESQAGTPSDKRQQLVTTAFKL---FYFQSVHGVGINQILQESAIAKKTLYHHFVSKDEL 61
Query: 214 TLLSMRYKAERLFQWIN 264
+RY+ E +QW++
Sbjct: 62 VKAVVRYRDETFYQWLS 78
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,124,411
Number of Sequences: 1393205
Number of extensions: 7685814
Number of successful extensions: 18087
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17990
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
