Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010255A_C02 KMC010255A_c02
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA17496.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.81
gb|EAA18835.1| hypothetical protein [Plasmodium yoelii yoelii] 34 1.4
gb|AAL37008.1|AF288656_1 envelope glycoprotein [Hantavirus SN7] 33 4.0
ref|NP_659444.1| PYRIN-containing APAF1-like protein 6 [Homo sap... 32 5.3
sp|P23902|FABB_HORVU 3-oxoacyl-[acyl-carrier-protein] synthase I... 32 6.9
>gb|EAA17496.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1261
Score = 35.0 bits (79), Expect = 0.81
Identities = 10/43 (23%), Positives = 28/43 (64%)
Frame = +3
Query: 123 RVIITQYLFHTSKAIQDSSYTKKVVYLLHNICSKYFQTLKCIS 251
+++I+ Y F+ K + +S++ K +++ + +C+ + T+K I+
Sbjct: 202 KILISSYFFNICKMLDESNFIKNQIFIFNKLCNDEYDTIKIIN 244
>gb|EAA18835.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 882
Score = 34.3 bits (77), Expect = 1.4
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 301 QIMDSIRRSRLRSCQTLKCISDQLSSAENNRQSGVHQIQMNLKCN*LFKHGPWKNFS 471
Q+ + IRR+ L DQ+++ N + ++QI+ NL+CN L + NFS
Sbjct: 781 QLQNIIRRTMLYKAFDTTSFKDQITNTLNKQTLLINQIKYNLQCNVLLLFDMYTNFS 837
>gb|AAL37008.1|AF288656_1 envelope glycoprotein [Hantavirus SN7]
Length = 1135
Score = 32.7 bits (73), Expect = 4.0
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Frame = +1
Query: 280 TTCLQHLQIMDSIRRSRLRSCQTLKCISDQLSSAENNRQSGVHQIQMNLKCN*LFKHGPW 459
T L+H I +S R + +C L C S +H M C L GP+
Sbjct: 108 TCVLKHKMIEESYRSRKSITCYDLSCNSTYCKPTLYMIVP-IHACNMMKSC--LIALGPY 164
Query: 460 KNFSAFDGIWSS----FTAKCFILDIASSYCIL*KSGI--VINVTIIIFFVGIKRTYSAL 621
+ ++ + KCF+ D S + K GI + +V I+ FFV +KR L
Sbjct: 165 RVQVVYERTYCMTGVLIEGKCFVPD--QSVVSIIKHGIFDIASVKIVCFFVAVKRNTYKL 222
Query: 622 F 624
F
Sbjct: 223 F 223
>ref|NP_659444.1| PYRIN-containing APAF1-like protein 6 [Homo sapiens]
gi|24212102|sp|P59045|PYA6_HUMAN PYRIN-containing
APAF1-like protein 6 gi|21314909|gb|AAM14632.1|
PYRIN-containing APAF1-like protein 6 [Homo sapiens]
gi|21961539|gb|AAH34730.1| PYRIN-containing APAF1-like
protein 6 [Homo sapiens] gi|28436376|gb|AAO18162.1|
NALP11 [Homo sapiens] gi|29372853|gb|AAO59428.1| NOD
protein family member 17 [Homo sapiens]
Length = 1033
Score = 32.3 bits (72), Expect = 5.3
Identities = 18/53 (33%), Positives = 26/53 (48%)
Frame = -3
Query: 413 IWWTPLCLLFSALES*SEIHFKVWHDLSLLLLIESMICKCCRHVVC*LRASKL 255
++W +C LF +ES E+H D L + E ++ K H C LR KL
Sbjct: 620 VYWREICSLFYTMESLRELHI---FDNDLNGISERILSKALEHSSCKLRTLKL 669
>sp|P23902|FABB_HORVU 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast precursor
(Beta-ketoacyl-ACP synthase I) (KAS I)
gi|100555|pir||A39356 3-oxoacyl-[acyl-carrier-protein]
synthase (EC 2.3.1.41) I beta chain precursor,
chloroplast - barley gi|167065|gb|AAA32968.1|
beta-ketoacyl-ACP synthase I
Length = 462
Score = 32.0 bits (71), Expect = 6.9
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -1
Query: 430 ISNSFGFGGHHSVCYFLHLK 371
ISNSFGFGGH+SV F K
Sbjct: 442 ISNSFGFGGHNSVVVFAPFK 461
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,940,301
Number of Sequences: 1393205
Number of extensions: 10637256
Number of successful extensions: 23264
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23259
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
