Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010238A_C01 KMC010238A_c01
(265 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH03883.1| Similar to RIKEN cDNA 2010107D16 gene [Mus musculus] 103 7e-23
gb|AAL06331.1|AF409139_1 U2 auxiliary factor small subunit [Arab... 101 9e-23
ref|NP_174086.1| splicing factor U2AF small subunit, putative; p... 101 9e-23
ref|NP_199096.1| splicing factor U2AF small subunit, putative; p... 101 9e-23
gb|AAL06332.1|AF409140_1 U2 auxiliary factor small subunit [Arab... 101 9e-23
>gb|AAH03883.1| Similar to RIKEN cDNA 2010107D16 gene [Mus musculus]
Length = 310
Score = 103 bits (256), Expect(2) = 7e-23
Identities = 46/48 (95%), Positives = 48/48 (99%)
Frame = +3
Query: 66 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVL 209
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTL+L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLL 48
Score = 24.3 bits (51), Expect(2) = 7e-23
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 196 PPSFFSNMYQRPDM 237
P +NMYQRPDM
Sbjct: 44 PTLLLANMYQRPDM 57
>gb|AAL06331.1|AF409139_1 U2 auxiliary factor small subunit [Arabidopsis thaliana]
Length = 296
Score = 101 bits (252), Expect(2) = 9e-23
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +3
Query: 66 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVL 209
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLL 48
Score = 25.4 bits (54), Expect(2) = 9e-23
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 196 PPSFFSNMYQRPDM 237
P SNMYQRPDM
Sbjct: 44 PTLLLSNMYQRPDM 57
>ref|NP_174086.1| splicing factor U2AF small subunit, putative; protein id:
At1g27650.1, supported by cDNA: 7697., supported by
cDNA: gi_12744990, supported by cDNA: gi_15723290,
supported by cDNA: gi_17528935, supported by cDNA:
gi_19699274, supported by cDNA: gi_20465942 [Arabidopsis
thaliana] gi|5668775|gb|AAD46002.1|AC005916_14 Strong
similarity to gb|Y18349 U2 snRNP auxiliary factor, small
subunit from Oryza sativa. ESTs gb|AA586295 and
gb|AA597332 come from this gene. [Arabidopsis thaliana]
gi|6693017|gb|AAF24943.1|AC012375_6 T22C5.10
[Arabidopsis thaliana]
gi|12744991|gb|AAK06875.1|AF344324_1 putative U2 snRNP
auxiliary factor [Arabidopsis thaliana]
gi|17528936|gb|AAL38678.1| putative U2 snRNP auxiliary
factor [Arabidopsis thaliana] gi|19699275|gb|AAL91249.1|
At1g27650/T22C5_2 [Arabidopsis thaliana]
gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary
factor protein [Arabidopsis thaliana]
gi|21595106|gb|AAM66073.1| putative U2 snRNP auxiliary
factor [Arabidopsis thaliana] gi|21689611|gb|AAM67427.1|
At1g27650/T22C5_2 [Arabidopsis thaliana]
Length = 296
Score = 101 bits (252), Expect(2) = 9e-23
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +3
Query: 66 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVL 209
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLL 48
Score = 25.4 bits (54), Expect(2) = 9e-23
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 196 PPSFFSNMYQRPDM 237
P SNMYQRPDM
Sbjct: 44 PTLLLSNMYQRPDM 57
>ref|NP_199096.1| splicing factor U2AF small subunit, putative; protein id:
At5g42820.1, supported by cDNA: gi_15723292 [Arabidopsis
thaliana] gi|22531195|gb|AAM97101.1| U2 snRNP auxiliary
factor small subunit [Arabidopsis thaliana]
gi|23198022|gb|AAN15538.1| U2 snRNP auxiliary factor
small subunit [Arabidopsis thaliana]
Length = 283
Score = 101 bits (252), Expect(2) = 9e-23
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +3
Query: 66 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVL 209
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLL 48
Score = 25.4 bits (54), Expect(2) = 9e-23
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 196 PPSFFSNMYQRPDM 237
P SNMYQRPDM
Sbjct: 44 PTLLLSNMYQRPDM 57
>gb|AAL06332.1|AF409140_1 U2 auxiliary factor small subunit [Arabidopsis thaliana]
Length = 283
Score = 101 bits (252), Expect(2) = 9e-23
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +3
Query: 66 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVL 209
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLL 48
Score = 25.4 bits (54), Expect(2) = 9e-23
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 196 PPSFFSNMYQRPDM 237
P SNMYQRPDM
Sbjct: 44 PTLLLSNMYQRPDM 57
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,345,325
Number of Sequences: 1393205
Number of extensions: 5115656
Number of successful extensions: 22959
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 21221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22886
length of database: 448,689,247
effective HSP length: 63
effective length of database: 360,917,332
effective search space used: 8662015968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
